PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462911615
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family C3H
Protein Properties Length: 550aa    MW: 58318.4 Da    PI: 7.0313
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462911615genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.22.9e-08135157426
                ---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                ++C++f+r G C+ Gd+C F+Hg
  462911615 135 VPCPNFRRPGGCPSGDSCEFSHG 157
                79********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484034.1E-867120IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029710.17970117IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.209.0E-971119IPR020683Ankyrin repeat-containing domain
CDDcd002047.51E-772117No hitNo description
PfamPF000236.9E-47299IPR002110Ankyrin repeat
PROSITE profilePS5010313.995131159IPR000571Zinc finger, CCCH-type
SMARTSM003565.6E-4131158IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-5132160IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.2E-6135158IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-6135157IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-4164196IPR000571Zinc finger, CCCH-type
SMARTSM0035621167190IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 550 aa     Download sequence    Send to blast
MGDLADLACA TEGPRLAGAG LRDRLAALLE LAAADDAAGF REALDGGGEE EATEVADGVG  60
LWYGRSKAYE PRTPLMVAAT YGSAAVVSLL LGLGCVDVNR RPGVDGATAL HCAASGGATS  120
NARRRDPRKH PYTAVPCPNF RRPGGCPSGD SCEFSHGVFE SWLHPSQYRT RLCKEGAACA  180
RRICFFAHDE DELRHVPHNS GAGLLSPRAT SSIDMTAAAA LGLLPGSPTR HFVPPPGSPS  240
SANNGGGAAA HWLQGSRLRS SFNARDAQAD DLGALLEWES QYLGALGLPQ SSRSQQRLST  300
GLSIRPTAIT PSSLEEMYAS DMAMSPRFVN DQGHSVYSPA HKSAILNKLH QQKGLLSPVN  360
TNRMYSPRSL DPSALIHSPF GGMSPRSPRT MEPTSPLSAR VGSTVTQREM FDQFSSLNRH  420
QVPSVGSPRN SNAAWGNIGT PKSKVDWGVD DEEMVRLRRP GQSGVAEEEP DVSWVQSLVN  480
NSELNGKRGE IAGMASRSLN RPDLSNQTDL LDQTGAASLC PLPVPICVLA HVSSIRCLPP  540
CQELGPLLAA
Cis-element ? help Back to Top
SourceLink
PlantRegMap462911615
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025801940.10.0zinc finger CCCH domain-containing protein 50-like
SwissprotQ84SL20.0C3H50_ORYSJ; Zinc finger CCCH domain-containing protein 50
TrEMBLA0A0A9EYK40.0A0A0A9EYK4_ARUDO; Uncharacterized protein
TrEMBLA0A2T7EXI30.0A0A2T7EXI3_9POAL; Uncharacterized protein
STRINGPavir.Ba00634.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82337126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12850.14e-71CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]