PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462910189
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family bHLH
Protein Properties Length: 122aa    MW: 13411.6 Da    PI: 10.8613
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462910189genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH18.92.8e-061559655
               HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH  6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
               +++ r RR++i ++ +eL +l+P a      +++ ae+L + v+++k Lq
  462910189 15 SAAARVRRKKITQKTAELSRLIPGA-----HRMTTAEMLHEGVRHVKLLQ 59
               567899******************9.....69***************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.83E-10667IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.60E-5862No hitNo description
Gene3DG3DSA:4.10.280.109.0E-8965IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.649958IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.9E-51564IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 122 aa     Download sequence    Send to blast
MDGGGDGSQT KSVQSAAARV RRKKITQKTA ELSRLIPGAH RMTTAEMLHE GVRHVKLLQA  60
QIGMLTLMRT VDAGSYEERL AAEGKCLVPR KLVDAMAKDK DVRSNPLVNR DLGRFIASLE  120
KK
Cis-element ? help Back to Top
SourceLink
PlantRegMap462910189
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014661333.14e-46uncharacterized protein LOC101765829
TrEMBLA0A2T7CI404e-47A0A2T7CI40_9POAL; Uncharacterized protein
TrEMBLA0A3L6S6L15e-47A0A3L6S6L1_PANMI; Uncharacterized protein
STRINGPavir.Ia04589.1.p7e-47(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62013051
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30670.11e-22bHLH family protein