PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462909186
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family AP2
Protein Properties Length: 825aa    MW: 90390 Da    PI: 5.4954
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462909186genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.43.1e-17233283153
        AP2   1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkl 53 
                + ++GVr++ + grWv+e+r+p   g +  r +lg+f+tae+Aa+a++aa++++
  462909186 233 PVFRGVRRRGNAGRWVCEVRVP---GrRGCRLWLGTFDTAEGAARAHDAAMLAI 283
                579******************9...6445**********************987 PP

2AP254.43.1e-17366416153
        AP2   1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkl 53 
                + ++GVr++ + grWv+e+r+p   g +  r +lg+f+tae+Aa+a++aa++++
  462909186 366 PVFRGVRRRGNAGRWVCEVRVP---GrRGCRLWLGTFDTAEGAARAHDAAMLAI 416
                579******************9...6445**********************987 PP

3AP237.65.7e-12584623143
        AP2   1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAa 43 
                + ++GVr++ + grWv+e+r+p   g +  r +lg+f+t  eA+
  462909186 584 PVFRGVRRRGNAGRWVCEVRVP---GrRGCRLWLGTFDT-AEAR 623
                579******************9...6445**********.8887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.4E-12233285IPR001471AP2/ERF domain
PROSITE profilePS5103220.811234293IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-17234295IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.4E-27234295IPR001471AP2/ERF domain
SMARTSM003801.6E-19234299IPR001471AP2/ERF domain
CDDcd000184.86E-20235295No hitNo description
PfamPF008471.4E-12366418IPR001471AP2/ERF domain
PROSITE profilePS5103220.811367426IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.4E-27367428IPR001471AP2/ERF domain
SMARTSM003801.6E-19367432IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-17367428IPR016177DNA-binding domain
CDDcd000184.86E-20368428No hitNo description
PfamPF008471.4E-8584623IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-9585622IPR016177DNA-binding domain
PROSITE profilePS5103214.276585624IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-14585624IPR001471AP2/ERF domain
SMARTSM003808.6E-5585645IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 825 aa     Download sequence    Send to blast
MCGPIKKEMS CESSSPCSSA STSSDHNTVW TSPPKRPAGR TKFRETRHPV YRGVRRRGTA  60
GLDEVRHAVA DAVEEFQRRE ALAEEDAGSA ASSAPSSPAT DGEDTTDSEE SSLAAEDATF  120
ELDVFSDMSW DVYYASLAQG MLVEPPSLAT AFVDDNAVDV HPQHQSSIKG IQIKTPGFRN  180
RELILNKMCP LKEEMSVESS SPCSSTSSEH QTVWTSPPKK PAGRTKFRET RHPVFRGVRR  240
RGNAGRWVCE VRVPGRRGCR LWLGTFDTAE GAARAHDAAM LAIAGSGACL NFADSAWLLA  300
VPASYHSLDD SRPAADRKKK MCPIKMEMSS DSSSPCSSTS SEHQTVWTSP PKKPAGRTKF  360
RETRHPVFRG VRRRGNAGRW VCEVRVPGRR GCRLWLGTFD TAEGAARAHD AAMLAIAGSG  420
ACLNFADSAW LLAVPASYHS LDDVRHAVAD AVEEFQRREA HAEDDARSAT SSTPSSPATD  480
GEDTTDGEES YPSMEDSTFE LDVFNDMSWD LYYASLAQGM LMEPPCLATA FGDDTMCPIN  540
PIKMEMSSDS SSPCSWTSSE HQTVWTSPPK KPAGRTKFRE TRHPVFRGVR RRGNAGRWVC  600
EVRVPGRRGC RLWLGTFDTA EARAGPCLNF ADSAWLLTVP ASYHSLDEVR HAVADAVEEF  660
QRREALAEED VRSATPSSSS ANSSDEDATD GEESSPAAED VTFELDVFND MSRAQSRRSA  720
TTAKPTSPIY RYYKTMDTPS PPQSSSTEPE EYMTVWSVPP KKPAGRTKFR ETRHPFDDGF  780
RFGGMDDAGS YYASLAQGLL VEPPADGSWW EDGESAGAEV ALWSY
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. Confers resistance to high salt, cold and drought stress (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462909186
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025799274.11e-104dehydration-responsive element-binding protein 1A-like
SwissprotA2Z3896e-87DRE1A_ORYSI; Dehydration-responsive element-binding protein 1A
TrEMBLA0A1E5UT371e-168A0A1E5UT37_9POAL; Dehydration-responsive element-binding protein 1A
STRINGPavir.J03891.1.p1e-107(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19636261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25470.15e-39C-repeat/DRE binding factor 2