PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462909115
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family AP2
Protein Properties Length: 393aa    MW: 43335.7 Da    PI: 6.2811
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462909115genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP233.21.3e-1052110255
        AP2   2 gykGVrwdkkrgrWvAeIrd.pseng....krkrfslgkfgtaeeAakaaiaarkkleg 55 
                 y+GV++++++gr++A+++d   +n     k+k+   g ++ +e Aa+a++ a++k++g
  462909115  52 AYRGVTRHRWTGRFEAHLWDkDAWNHesqtKKKKGKQGAYDEEEAAARAHDLAALKYWG 110
                69******************6555667777554445599******************98 PP

2AP246.78e-15153204155
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                s+y+GV +++ +grW+A+I  +     +k+ +lg++ t eeAa a++ a+ + +g
  462909115 153 SKYRGVARHHHNGRWEARIGRVLG---NKYLYLGTYSTQEEAAVAYDIAAIEHRG 204
                89****99**********988422...5**********************99887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.24E-1351119IPR016177DNA-binding domain
PfamPF008471.9E-852110IPR001471AP2/ERF domain
SMARTSM003806.8E-1952124IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.1E-1252118IPR001471AP2/ERF domain
PROSITE profilePS5103218.22852118IPR001471AP2/ERF domain
PRINTSPR003671.8E-55364IPR001471AP2/ERF domain
PfamPF008471.8E-9153203IPR001471AP2/ERF domain
CDDcd000189.12E-23153214No hitNo description
SuperFamilySSF541712.88E-17153214IPR016177DNA-binding domain
PROSITE profilePS5103217.886154212IPR001471AP2/ERF domain
SMARTSM003801.5E-26154218IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.8E-18154212IPR001471AP2/ERF domain
PRINTSPR003671.8E-5194214IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0045723Biological Processpositive regulation of fatty acid biosynthetic process
GO:1901959Biological Processpositive regulation of cutin biosynthetic process
GO:1904278Biological Processpositive regulation of wax biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0000981Molecular FunctionRNA polymerase II transcription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MARAPKNART NDESITAGAE PKPKRARKSA SRESASSSSS QQQQQQQQRT SAYRGVTRHR  60
WTGRFEAHLW DKDAWNHESQ TKKKKGKQGA YDEEEAAARA HDLAALKYWG PGTVLNFPLC  120
SYDEELKEME GQAREEYIGS VRRKSSGFSR GVSKYRGVAR HHHNGRWEAR IGRVLGNKYL  180
YLGTYSTQEE AAVAYDIAAI EHRGLNAVTN FDISHYVNWH RHRRLLGEDD GLDATETGPI  240
QLPNNDITEA APVAISLDET VVAAAAFHDG ERGQYHDADS YIAQLPGDQL VRTPGHKSAL  300
DLLLQSPKFK EMMEQVSAAA AAATESNISS PSPSPSTSSS SPSLSQPSPE ERQPELNGCD  360
DGMSFTFAEV DTFLFGDLGA YAAPMFQCDM DAV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004973570.11e-141PREDICTED: AP2-like ethylene-responsive transcription factor At2g41710
SwissprotQ6X5Y61e-85WRI1_ARATH; Ethylene-responsive transcription factor WRI1
TrEMBLK3YHX31e-143K3YHX3_SETIT; Uncharacterized protein
STRINGSi013842m1e-143(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33193678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79700.24e-76AP2 family protein