PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462908901
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family AP2
Protein Properties Length: 478aa    MW: 51650.5 Da    PI: 8.3629
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462908901genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP241.14.5e-13158214155
        AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                s+y+GV++++++gr++A+++d  ++ +g  rk  + g ++t+++Aa+a++ a++k++g
  462908901 158 SQYRGVTRHRWTGRYEAHLWDnSCKrDGqTRKGRQ-GGYDTEDKAARAYDLAALKYWG 214
                78*******************98887775446655.77***99*************98 PP

2AP247.44.8e-15257308155
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                s y+GV+++++ grW A+I  +     +k  +lg++ t eeAa+a++ a+ k++g
  462908901 257 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTYSTQEEAAEAYDIAAIKFRG 308
                57****************988532...5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.31E-14158224IPR016177DNA-binding domain
PfamPF008477.0E-10158214IPR001471AP2/ERF domain
CDDcd000189.35E-18158223No hitNo description
PROSITE profilePS5103217.675159222IPR001471AP2/ERF domain
SMARTSM003802.8E-21159228IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-12159223IPR001471AP2/ERF domain
PRINTSPR003672.6E-6160171IPR001471AP2/ERF domain
PfamPF008473.2E-10257308IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-17257317IPR016177DNA-binding domain
CDDcd000181.32E-23257318No hitNo description
SMARTSM003802.6E-33258322IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.0E-18258316IPR001471AP2/ERF domain
PROSITE profilePS5103219.019258316IPR001471AP2/ERF domain
PRINTSPR003672.6E-6298318IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 478 aa     Download sequence    Send to blast
MEAPSSSEPA PPPHPPAPAS ATMSSSPNST TTCNFLFSSP AQMATPSPGY YYVGGAYGDG  60
TTTAGVYYSH PHLPVMPVKS DGSLCNMEGS QSSGCVGAAP QQQHQIVAVA AAASAAAAQG  120
RSNGGGEQCV GKKRGTGKGG HKQPVHRKSI DTFGQRTSQY RGVTRHRWTG RYEAHLWDNS  180
CKRDGQTRKG RQGGYDTEDK AARAYDLAAL KYWGPATHIN FPVEHYREEL EEMEGMTRLE  240
YVAHLRRRSS GFSRGASIYR GVTRHHQHGR WQARIGRVAG NKDLYLGTYS TQEEAAEAYD  300
IAAIKFRGLN AVTNFDVTRY DVEKIMESNV LLPGEEARRV KAIEPVHGAS VMHNSGRELN  360
QSGEAITEWR MGLHGASQEP APCIEAADLQ KSVMGDPHSS LHGIAGLDFS NSSSLVTSLG  420
NSREGSPERQ GPAMLYTKHP DAAVSLANMN PWMQMPAPHL LRPGNVSHLP VFAAWADA
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462908901
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021318295.10.0AP2-like ethylene-responsive transcription factor ANT isoform X2
SwissprotQ84Z021e-135CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5
TrEMBLA0A0A9NXM70.0A0A0A9NXM7_ARUDO; Uncharacterized protein
STRINGSb01g042090.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP94838133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.11e-104AP2 family protein
Publications ? help Back to Top
  1. Kitomi Y, et al.
    The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling.
    Plant J., 2011. 67(3): p. 472-84
    [PMID:21481033]
  2. Li P,Xue H
    Structural characterization and expression pattern analysis of the rice PLT gene family.
    Acta Biochim. Biophys. Sin. (Shanghai), 2011. 43(9): p. 688-97
    [PMID:21807632]