PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462908761
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family C3H
Protein Properties Length: 325aa    MW: 35999.9 Da    PI: 8.989
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462908761genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.66.6e-111844127
               --S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
               ++++ C +++rtG C++G +CkF+H+p
  462908761 18 PGEADCIYYLRTGLCRFGMTCKFNHPP 44
               57899********************97 PP

2zf-CCCH39.41e-126589327
               S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
               +++C++++rtGtCk+G+ CkF+H++
  462908761 65 QPECQYYLRTGTCKFGAACKFHHPR 89
               799********************96 PP

3zf-CCCH26.79.3e-09111135327
                S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                +++C ++ rtG+Ck+  +CkF+H++
  462908761 111 EKECAYYVRTGQCKFAKTCKFHHPE 135
                679********************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.1E-41744IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.5631745IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-81944IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-52145IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.7E-42343IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.5356290IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-56289IPR000571Zinc finger, CCCH-type
PfamPF006423.4E-106589IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-66691IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.0E-56890IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.28E-6108136IPR000571Zinc finger, CCCH-type
SMARTSM003566.9E-4108135IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.742108136IPR000571Zinc finger, CCCH-type
PfamPF006426.2E-6111135IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.695223251IPR000571Zinc finger, CCCH-type
SMARTSM003560.77224250IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.55E-5226252IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MTLGGGESME SGPYPERPGE ADCIYYLRTG LCRFGMTCKF NHPPNRNLIV AAERIKGDYP  60
HRAGQPECQY YLRTGTCKFG AACKFHHPRE KAAVTTHVQL NVLGYPLRPN EKECAYYVRT  120
GQCKFAKTCK FHHPEPSNTV AAVHGHIYSP GQSATSPGQH TYPGVVTDPE VSRSTSFIAN  180
PPWPGHSVYP HVGQGLVQAH GWNPYAWNIM RYMAQFQLNI MRYKGKPICT YYCCYGKCKF  240
GPNCKFDHPI GSLYGTATSP TGDAPMRYGQ LAPSPGESER LLDGGSGMSH RISQSDSSKY  300
PPAMKVLKER GIMNALQSFH TASHP
Cis-element ? help Back to Top
SourceLink
PlantRegMap462908761
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025810066.11e-136zinc finger CCCH domain-containing protein 66
SwissprotQ2QT651e-131C3H66_ORYSJ; Zinc finger CCCH domain-containing protein 66
TrEMBLA0A3L6REA41e-136A0A3L6REA4_PANMI; Zinc finger CCCH domain-containing protein 66-like isoform X2
STRINGOPUNC12G08520.31e-133(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115338132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.14e-78zinc finger protein 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]