PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462908683
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family bHLH
Protein Properties Length: 320aa    MW: 34761.3 Da    PI: 6.5115
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462908683genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.62.6e-14114165155
                CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                +r++h ++Er+RR+++N+ ++ Lr+l+P++   ++ + + a+i+  A++Y+++L+
  462908683 114 QRMTHIAVERNRRRQMNEYLAVLRSLMPPS---YAHRGDQASIVGGAINYVRELE 165
                79****************************...9******************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000839.22E-15112169No hitNo description
Gene3DG3DSA:4.10.280.104.3E-14113169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-17113180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.904113164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-11114165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.1E-11119170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MALEAVVFAQ AGGGHFGYGR VDSPYALPWC DQLPGFGFGE AFAGDWDHHH HHELLASAAP  60
DVDEWDAVDS ARDQLSSEAS TEGNKACRSE PAAAGRRKRR RTKVVKNKEE IETQRMTHIA  120
VERNRRRQMN EYLAVLRSLM PPSYAHRGDQ ASIVGGAINY VRELEQLLQS LEVQKSIKSR  180
ASCPCTDAAT SPTPPRRTLP PAALATRAPS SSTATPQDQP DPAPPAAAVA DIEVTMGEGH  240
ASLKVLAPRL PKQLLKLVAG LHQLRVPPLH LNMTSVDAMV LYTFSLKVED DSKMGSVEDI  300
AAAVHEILSS IQLQEETAVM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
196100RKRRR
296101RKRRRT
3114125RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMap462908683
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0420302e-99BT042030.1 Zea mays full-length cDNA clone ZM_BFb0114I01 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796362.11e-118transcription factor bHLH94-like
SwissprotQ9C7T47e-66BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A0A9F3U91e-141A0A0A9F3U9_ARUDO; Uncharacterized protein
STRINGPavir.J40759.1.p1e-119(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74138156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22490.12e-48bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]