PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462908510
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family bHLH
Protein Properties Length: 356aa    MW: 38787.5 Da    PI: 8.4574
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462908510genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH130.00019132181154
                CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
        HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                r++ + erE+  Rd++N+ f eL ++l ++     + + Ka iL  +++ +k+L
  462908510 132 RKVHKAEREKLKRDHLNDLFIELGDMLDED----RQNNGKACILADTTRILKDL 181
                677889*********************997....46677777777777777765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474599.55E-11129201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088810.607131181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.0E-9131200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010106Biological Processcellular response to iron ion starvation
GO:0055072Biological Processiron ion homeostasis
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
AVYVPKLGEG PPPRASSSLF SPPSPYPLAQ EQRTPNSNKS IEYEKGRSQQ PRSQPSPNPR  60
VLSPIRSGAS RSRRGGEGAS RKRLIGSTEI CMPGMVPSDR GSVATAVSTA AATDKLLHGP  120
VSGKKIQKNV PRKVHKAERE KLKRDHLNDL FIELGDMLDE DRQNNGKACI LADTTRILKD  180
LLSQVESLRK ENSTLQNESH YVTTERDELR DETSALGKEI LELQNELRMR LSSNSGWGHG  240
AAESDSADAV FPLPQQVQPP SMTSPVIPLQ QPLPPQTVIE IPYAATPREL KLFPKAGFEP  300
AEGQEATNHV ARPQARYPTQ AASWTVSLFS GLPGMEEEQC SSNTTGSSKE ASTGRD
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that plays a positive role in salt stress tolerance. Interacts with TIFY11A/JAZ9 and binds to the promoter of some potassium ion transporter genes to regulate potassium homeostasis during salt stress. {ECO:0000269|PubMed:25617318}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462908510
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001148562.11e-116amelogenin precursor like protein
RefseqXP_008676027.11e-116amelogenin precursor like protein isoform X1
RefseqXP_008676033.11e-116amelogenin precursor like protein isoform X1
RefseqXP_008676036.11e-116amelogenin precursor like protein isoform X1
SwissprotQ69V106e-80BH062_ORYSJ; Transcription factor BHLH062
TrEMBLB6T4L81e-115B6T4L8_MAIZE; Amelogenin like protein
STRINGGRMZM2G350312_P021e-116(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24813884
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47640.31e-35bHLH family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]
  3. Wu H,Ye H,Yao R,Zhang T,Xiong L
    OsJAZ9 acts as a transcriptional regulator in jasmonate signaling and modulates salt stress tolerance in rice.
    Plant Sci., 2015. 232: p. 1-12
    [PMID:25617318]