PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462906352
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family SBP
Protein Properties Length: 387aa    MW: 42078.5 Da    PI: 7.4155
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462906352genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP128.72.1e-40163241178
                --SSTT-----TT--HHHHHTT--HHHHT-S-EE.ETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
        SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvl.vsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                +Cq+egC+adls ak+yhrrhkvCe+hskapvv+ + gl+qrfCqqCsrfh l+efD++k+sCr+rLa+hn+rrrk+++
  462906352 163 RCQAEGCKADLSGAKRYHRRHKVCEHHSKAPVVVtAGGLHQRFCQQCSRFHLLDEFDDAKKSCRKRLADHNRRRRKSKP 241
                6******************************98725689*************************************975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.104.1E-34158226IPR004333Transcription factor, SBP-box
PROSITE profilePS5114130.222161239IPR004333Transcription factor, SBP-box
SuperFamilySSF1036124.84E-37162242IPR004333Transcription factor, SBP-box
PfamPF031106.6E-31164238IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MNIPAAAGAN ACDEFPYVSA PPPSLLPIME HEQQQESSIQ RGEHHHHHHQ LGYNLEANSL  60
ALLPPSNHAA AHQTTITPIV SHSPHDILQF SPAAAASSHH HYLAAGAGNY FGAAGSTFQS  120
YYPQAAAAAA QPEYYFPTLV SSAEENMASF AATQLGLGHH PPRCQAEGCK ADLSGAKRYH  180
RRHKVCEHHS KAPVVVTAGG LHQRFCQQCS RFHLLDEFDD AKKSCRKRLA DHNRRRRKSK  240
PSDADAADKK RAQANKAAAA KDKAGSSSKN MDIGDGLTTQ VLGSALFSKE QDQAMDLGEV  300
VKEAVDPKGK SSMQQHAHHQ GIHQQNHHGF PFPTSSGSCF PQSQAVSSDN TSNIAQVQEP  360
SLAFHQHHQH SNILQLGQAM FDMDFDH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-261642381184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1233250RRRRKSKPSDADAADKKR
2234239RRRKSK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that plays an important role in building the laminar joint between leaf blade and leaf sheath boundary, thereby controlling ligule and auricle development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462906352
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankZMU894961e-163U89496.1 Zea mays liguleless1 protein (liguleless1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004960135.10.0protein LIGULELESS 1
SwissprotQ01KM71e-170SPL8_ORYSI; Squamosa promoter-binding-like protein 8
TrEMBLA0A0A9DKR30.0A0A0A9DKR3_ARUDO; Lg1
STRINGSi022315m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69903452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.11e-37squamosa promoter binding protein-like 8