PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462904885
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family B3
Protein Properties Length: 99aa    MW: 11414.4 Da    PI: 11.078
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462904885genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.12.5e-1612921495
               T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEE CS
         B3 14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvk 95
               ++l l  ++a++  +++ +++t++l+  + + W+ k+ +r +++r +l++GW++Fv++ngL+ gD+++++l+++ ++ ++  +
  462904885 12 SMLELGSRYATAVHLPS-RGQTVVLKY-TRKIWKAKMVVRCGGRRQYLSGGWSKFVRDNGLRIGDICLLELKKNeRKLTMEAH 92
               56677788888887775.555777665.88*******9999999999************************987566665555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010196.2E-7197IPR003340B3 DNA binding domain
PROSITE profilePS5086311.068197IPR003340B3 DNA binding domain
CDDcd100176.11E-18196No hitNo description
Gene3DG3DSA:2.40.330.108.3E-17292IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.44E-16286IPR015300DNA-binding pseudobarrel domain
PfamPF023623.4E-141293IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 99 aa     Download sequence    Send to blast
MSKSSVGDPQ RSMLELGSRY ATAVHLPSRG QTVVLKYTRK IWKAKMVVRC GGRRQYLSGG  60
WSKFVRDNGL RIGDICLLEL KKNERKLTME AHIIFREQF
Cis-element ? help Back to Top
SourceLink
PlantRegMap462904885
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025797620.17e-36B3 domain-containing protein Os03g0619800-like isoform X3
SwissprotQ6AV221e-25Y3196_ORYSJ; B3 domain-containing protein Os03g0619600
TrEMBLA0A0A8ZPI97e-40A0A0A8ZPI9_ARUDO; Uncharacterized protein
TrEMBLA0A0A9SJW42e-40A0A0A9SJW4_ARUDO; Uncharacterized protein
STRINGPavir.Ib02115.1.p4e-35(Panicum virgatum)
STRINGPavir.Ib02116.1.p2e-35(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58531172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.18e-08B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]