PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462903914
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family C3H
Protein Properties Length: 1280aa    MW: 136073 Da    PI: 4.2852
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462903914genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.82.9e-0612601280526
                 --SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH    5 lCrffartGtCkyGdrCkFaHg 26  
                  C+ f+++G+C+ G++C++ H+
  462903914 1260 VCK-FHEGGYCRKGASCSYLHP 1280
                 688.*****************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.45512551280IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
GO:0046872Molecular Functionmetal ion binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1280 aa     Download sequence    Send to blast
MLSHSERVPV CSPQSAPSAS PDMCKIEEIM NQQGTLEADT SNASVNQSPE SKTFPISSPD  60
NQDIEREFPS PTPRPENKEP VVDNSGLTPA SPEKLANTHS PGSDPCKMEA IVNRQKLPGA  120
GTSNSSDNHY PQSSNKDLEG EYLSPIARSD NKEPAVDNSL PTLPATENLR MNSASDADTC  180
KMEVTVNQQK PLEMDALNAS LNQSSGSNIF PVSSTDNQGI ERACPTPTPG SGNKVPSLDN  240
SGSAAPENFT TATASASDAC KMEEILDKKT TLETDASNGS VAPLQSKVSV VTSPDNLDIE  300
RECPSPAHRS ENKEPLADDS VLMSAAPENA PTTASAFNGC KMEETLNKKT VFETDVSNCP  360
VSPSPQSKEF TASPDNKDIQ QQYSNPIPEN KEPVVDNTGL ILTSPENFTT KVPGDSKDAF  420
ASPKSDPPTG KLNATVSDFK GVEEIIQNEL YPVIAWSPSE SRTASSQHDG SCLSSTTNPS  480
FLDDHHSSIA SEKPKNCAPA TPIEDRGSSS PSGMLSHSER VPVCSPQSAP SASPDMCKIE  540
EIMNQQGTLE ADTSNASVNQ SPESKSFPIS SPDNQDIERE FPSPTPRPEN KEPVVDNSGL  600
TPASPEKLAN THSPGSDPCK MEAIVNRQKL PGAGTSNSSD NHYPQSSNKD LEGEYLSPIA  660
RSDNKEPAVD NSLPTLPATE NLRMNSASDA DTCKMEVTVN QQKPLEMDAL NASLNQSSGS  720
NIFRVSSTDN QGIERACPTP TPGSGNKVPS LDNSGSAAPE NFTTATASAS DACKMEEILD  780
KKTTLETDAS NGSVAPLQSK VSVVTSPDNL DIERECPSPA HRSENKEPLA DDSVLMSAAP  840
ENAPTTASAF NGCKMEETLN KKTVFETDVS NCPVSPSPQS KEFTASPDNK DIQQQYSNPI  900
PENKEPVVDN TGLILTSPEN FTTKVPGDSK DAFASPKSDP PTGKLNATLT DFKGVEEIIQ  960
NELYSESIVV TRENMVIDPS CGAESIDVSD VLESLMEQNG TAALEDLLAA SAEEEPQCSS  1020
PIVLSPWGEP SYYQGDAVDS TLWGVQDDSV NDMWSLLPPT PALQPSSADL GTEANETLHI  1080
NKVAASHGVI EFLQRGGTPA EENVNQALSG AATDWVLPEQ VKSTPNDVST HESTGIVGWQ  1140
PSADQRLSVV TALGTNQSLY LPGCEKAATS SKSSLEASRK QESTDSCVSS SGEAIGNITK  1200
GLNPPSVNAN RGRQQNHRRG RYSEISESWL LSSNNSRSRS DRFGNGGSSR STLNGQNRGV  1260
CKFHEGGYCR KGASCSYLHP
Cis-element ? help Back to Top
SourceLink
PlantRegMap462903914
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0A9CM590.0A0A0A9CM59_ARUDO; Uncharacterized protein
STRINGGRMZM2G393471_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27091822