PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462902771
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family bHLH
Protein Properties Length: 74aa    MW: 8189.45 Da    PI: 11.7815
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462902771genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.24.5e-114269330
               HHHHHHHHHHHHHHHHHHHHHHCTSCCC CS
        HLH  3 rahnerErrRRdriNsafeeLrellPka 30
               ++h+e+ErrRR+riN  +++Lr+llP+ 
  462902771 42 KSHSEAERRRRERINAHLARLRSLLPNT 69
               79************************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.5733974IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-84269IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-84269IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.27E-84270IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 74 aa     Download sequence    Send to blast
MGHHHGVGSG MMMPPPFGSP FGDFGRMTAQ EIMDAKALAA SKSHSEAERR RRERINAHLA  60
RLRSLLPNTT KVIH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14752ERRRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMap462902771
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1254953e-67AC125495.4 Oryza sativa Japonica Group chromosome 3 clone OSJNBa0085M22, complete sequence.
GenBankAK3771633e-67AK377163.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3150E20.
GenBankAP0149593e-67AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126113e-67CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004984717.13e-30transcription factor bHLH30
SwissprotQ9S7Y13e-17BH030_ARATH; Transcription factor bHLH30
TrEMBLA0A1E5UY764e-31A0A1E5UY76_9POAL; Transcription factor bHLH30
TrEMBLA0A453IGI83e-31A0A453IGI8_AEGTS; Uncharacterized protein
STRINGOMERI03G10590.13e-30(Oryza meridionalis)
STRINGMLOC_66385.13e-30(Hordeum vulgare)
STRINGSi039730m1e-29(Setaria italica)
STRINGTraes_4DL_7BD3165FB.17e-31(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19183898
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.12e-10bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ohashi-Ito K, et al.
    A bHLH complex activates vascular cell division via cytokinin action in root apical meristem.
    Curr. Biol., 2014. 24(17): p. 2053-8
    [PMID:25131670]
  3. Katayama H, et al.
    A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem.
    Curr. Biol., 2015. 25(23): p. 3144-50
    [PMID:26616019]