PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462901588
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family AP2
Protein Properties Length: 374aa    MW: 41680.8 Da    PI: 9.1965
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462901588genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.82.4e-1757106155
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  462901588  57 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 106
                78*******************......55************************998 PP

2AP243.76.6e-14149199155
        AP2   1 sgykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 
                s+y+GV+ +k  grW+A+       g    +k+++lg f+++ eAa+a+++a+++++g
  462901588 149 SKYRGVTLHK-CGRWEAR---M---GqllGKKYVYLGLFDSEIEAARAYDRAALRFNG 199
                89********.7******...5...334336**********99***********9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541715.95E-1657115IPR016177DNA-binding domain
PfamPF008471.6E-957106IPR001471AP2/ERF domain
CDDcd000182.29E-1157116No hitNo description
SMARTSM003802.5E-3258120IPR001471AP2/ERF domain
PROSITE profilePS5103217.64958114IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.2E-1758114IPR001471AP2/ERF domain
PfamPF008479.9E-10149199IPR001471AP2/ERF domain
CDDcd000185.67E-26149209No hitNo description
SuperFamilySSF541717.85E-17149208IPR016177DNA-binding domain
SMARTSM003801.7E-32150213IPR001471AP2/ERF domain
PROSITE profilePS5103216.489150207IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-16150207IPR001471AP2/ERF domain
PRINTSPR003671.4E-6151162IPR001471AP2/ERF domain
PRINTSPR003671.4E-6189209IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MTRQLFPVPS PLAVPEPELA AAPVPVWQPR RAEDLVVAQR PVVAAKKTRR GPGSRSSQYR  60
GVTFYRRTGR WESHIWDCGK QVYLGGFDTA HAAARAYDRA AIKFRGLEAD INFTLSDYEE  120
DLKQMRNWTK EEFVHILRRQ STGFARGSSK YRGVTLHKCG RWEARMGQLL GKKYVYLGLF  180
DSEIEAARAY DRAALRFNGR EAVTNFEPSS YNGGDALPDT ENEAIVDGDA VDLDLRISQP  240
NVHDSKRSNP LSGLQLTCDS PESSSAMASQ PMSSSSPWPV YHQSTVVPPH HQRLYPSASP  300
SFFPNSQERP MERRPELGPP SFPNWGWQMQ GSPHMPLLNS AASSGFSTAV GGVPLPSHPP  360
APFPDRHFYF PPTA
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition (Probable). Together with SNB, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes (PubMed:22003982). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:22003982, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00615PBMTransfer from AT2G28550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap462901588
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000269|PubMed:22003982, ECO:0000305|PubMed:20017947, ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025792819.10.0AP2-like ethylene-responsive transcription factor TOE3 isoform X1
SwissprotQ84TB51e-174AP22_ORYSJ; APETALA2-like protein 2
TrEMBLA0A2T7BZ330.0A0A2T7BZ33_9POAL; Uncharacterized protein
STRINGPavir.J23520.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24483890
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.38e-93related to AP2.7
Publications ? help Back to Top
  1. Lee DY,An G
    Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice.
    Plant J., 2012. 69(3): p. 445-61
    [PMID:22003982]
  2. Wang L, et al.
    Coordinated regulation of vegetative and reproductive branching in rice.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(50): p. 15504-9
    [PMID:26631749]
  3. Dai Z,Wang J,Zhu M,Miao X,Shi Z
    OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice.
    Front Plant Sci, 2016. 7: p. 1891
    [PMID:28066457]