PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462900998
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family AP2
Protein Properties Length: 145aa    MW: 17004 Da    PI: 10.2135
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462900998genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP227.57.8e-09858755
        AP2  7 rwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55
               r+++++gr++A+++d  s+n  ++k+   g ++ ++ Aa+a++ a++k++g
  462900998  8 RRHRWTGRFEAHLWDkNSWNEsQNKKGKQGAYDDEDAAARAYDLAALKYWG 58
               89*************8888888775555599***99*************98 PP

2AP2292.6e-09108142138
        AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgt 38 
                s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t
  462900998 108 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYVT 142
                89****99**********99966...3.6********76 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103217.016266IPR001471AP2/ERF domain
PfamPF008474.9E-5858IPR001471AP2/ERF domain
SMARTSM003806.0E-12872IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-12868IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.4E-10968IPR001471AP2/ERF domain
PfamPF008472.7E-5108141IPR001471AP2/ERF domain
SuperFamilySSF541716.15E-6108142IPR016177DNA-binding domain
PROSITE profilePS510329.822109145IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.9E-5109143IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    Send to blast
MITRLIARRH RWTGRFEAHL WDKNSWNESQ NKKGKQGAYD DEDAAARAYD LAALKYWGPD  60
TILNFPASAY EEELKEMEGQ SREEYIGSLR RSMEFIHRKS SGFSRGVSKY RGVARHHHNG  120
RWEARIGRVF GNKYLYLGTY VTSVR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0551118e-79BT055111.1 Zea mays full-length cDNA clone ZM_BFc0006C10 mRNA, complete cds.
GenBankBT0396328e-79BT039632.1 Zea mays full-length cDNA clone ZM_BFc0035F11 mRNA, complete cds.
GenBankKJ7275888e-79KJ727588.1 Zea mays clone pUT5448 AP2-EREBP transcription factor (EREB143) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015696557.16e-81PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060
SwissprotQ6X5Y61e-70WRI1_ARATH; Ethylene-responsive transcription factor WRI1
TrEMBLJ3MXL36e-81J3MXL3_ORYBR; Uncharacterized protein
STRINGOB09G17420.12e-80(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33193678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79700.22e-63AP2 family protein