PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462899907
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family C3H
Protein Properties Length: 395aa    MW: 46328.9 Da    PI: 9.331
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462899907genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.89.2e-0999121426
                ---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                ++C+f+++t  Ck+G  CkF+H 
  462899907  99 SECQFYMKTEDCKFGVVCKFHHH 121
                68********************7 PP

2zf-CCCH30.27.7e-10230255227
                -S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                ++++C+f+++   Ck+G  CkF+H++
  462899907 230 DQPECQFYMKIEDCKFGVVCKFHHPK 255
                689*********************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501039.59295123IPR000571Zinc finger, CCCH-type
SMARTSM003560.4996122IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.22E-598124IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-599121IPR000571Zinc finger, CCCH-type
SMARTSM003560.24228255IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.22228256IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-6230255IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.334375395IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MSVLYEDRRL RTTTTPRRAH MHFLLSLWNV QVWSKMKIRS SNASRHVQPC FITGVRSQLL  60
DVCWHMYHRI RIVFRPHIQS SWLCSSCALC STEGLLDKSE CQFYMKTEDC KFGVVCKFHH  120
HKDRTVPVPN CALSSAELPL RLGEPICTFY YRYGMFNRHV QPSFITGVRS QLLDVCWHMY  180
HRIRIVFRPH IQSSDSNPSR TLNKSSIECH VIIPLLFAVQ RGNVFLNRPD QPECQFYMKI  240
EDCKFGVVCK FHHPKDRTVP VPNCALSSVE LPLRLGEPIC TFYYRYGILV QNENSIIQCK  300
PSCTAFLHHQ PVRSQLLDVC WHMYHRIRIV FRPHSPYIGR MYSYTDLRNQ NFHHPKNRTV  360
SAPNCVLSSI ELPPRSGEPI CTFYSHYGMF KFGPK
Cis-element ? help Back to Top
SourceLink
PlantRegMap462899907
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16540.31e-43zinc finger nuclease 3