PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462899904
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family C3H
Protein Properties Length: 302aa    MW: 34084.4 Da    PI: 11.2908
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462899904genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH322.1e-10196218224
                -S---SGGGGTS--TTTTT-SS- CS
    zf-CCCH   2 ktelCrffartGtCkyGdrCkFa 24 
                + ++C+f+++tG+Ck+G  CkF+
  462899904 196 DKPECQFYMKTGECKFGVVCKFH 218
                6799******************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501039.817194222IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-7196218IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MPQPCCALAR APPRRGEGER QGGGEIWPAA RKRRGRSGLR RIRGGGPGQI RSVARKKRGN  60
PAGSEEEERG DAVAGGWRRG RGGRDAAAAE VGHWRRRREE ELRHHPPSCP GLVAPWPRSA  120
SARKMRGRSG LRPVRGGGPG EIRPAARKKR GDLEAYLLYS QSTKLIRKRY PKFSKKKSWL  180
GLYAVHRENV FLDRPDKPEC QFYMKTGECK FGVVCKFHIS KDQIVPIPNF QSNCHYARES  240
PYALSILAIK CASFVLNANS IIQCKPSCTA LLHKQPVRSQ LLDVCWHMYH HIHIVFRPHI  300
RS
Cis-element ? help Back to Top
SourceLink
PlantRegMap462899904
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0189146e-38BT018914.1 Zea mays clone EL01T0403G12.d mRNA sequence.
GenBankBT0405716e-38BT040571.1 Zea mays full-length cDNA clone ZM_BFc0101B05 mRNA, complete cds.
GenBankBT0636436e-38BT063643.1 Zea mays full-length cDNA clone ZM_BFc0089D01 mRNA, complete cds.
GenBankBT0674526e-38BT067452.1 Zea mays full-length cDNA clone ZM_BFc0051N01 mRNA, complete cds.
GenBankJX4284736e-38JX428473.1 Zea mays subsp. mays clone pUT3069 C3H11 C3H type transcription factor mRNA, partial cds.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16540.34e-17zinc finger nuclease 3