PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462899575
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family bHLH
Protein Properties Length: 779aa    MW: 85049.2 Da    PI: 5.9336
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462899575genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.50.000555846211355
                HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
        HLH  13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                R+ i +++ eLrel+P+ a      K s  + Lek+v+++  Lq
  462899575 584 RQLIQDRIKELRELVPNgA------KCSIDALLEKTVKHMLFLQ 621
                67799************66......999999********99998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142155.2E-276150IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000830.0049565621No hitNo description
PROSITE profilePS5088810.487571620IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.6E-4584629IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010078Biological Processmaintenance of root meristem identity
GO:0010089Biological Processxylem development
GO:0010479Biological Processstele development
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 779 aa     Download sequence    Send to blast
MAVGDALRRL CEEIGWSYAV FWKAIGAADP VHLVWEDGYC GHTSCPAGSE PSEALPNEVG  60
CSAADGAMCS LVKKVIASQV HVVGEGTVGR AAFTGNHQWI VHGTANGHGL SSEVAAEMNN  120
QFKAGIQTIA IIPVLPRGVL QLGSTGLVVQ QDGRPFRENT VHAEPEVRLE QQTSYCESRF  180
GTSTQRADVS SALISPSLTS VQKQSLLFSN ASPLGSGNNA DLARNILLQS IVYRDSSVYG  240
NTNINTAHGR YEVYNGRHGP ANFDFIPGVG RVVKDTSLLS QVTDQRCHSL SRALLQKQPI  300
VPQPSEFSTK MDNPERGPFQ DPSAPSSVSD GQVSNSFNTI HGQDDQLDRS DNMHQGQRMK  360
NGEDMPEERV SSLLVDPPPD NDLFDIFGAE FQQFSHNLGA DLVSWSGPRS QNSDRDVPES  420
SIYFDRSPLF SSVDNEFPYS GNFSLTDTDQ LLDAVISNAN PGGKQSSVDS GSCKTSLTDI  480
PSTSHLGEKE LKQYESTGVP SVLIKHESAQ IVKQPCFFDK SNDGCLSQNN GGHKSQIRLW  540
IESGQNRKCE SASASNSKGL DTPSKTNRKR SRPGESAKPR PKDRQLIQDR IKELRELVPN  600
GAKCSIDALL EKTVKHMLFL QSVTKHADKL KNTNESKILG GENGPLWKDY FEGGATWAFE  660
VGSQSMTCPI IVEDLDRPRQ MLVEMLCEDR GIFLEIADFI KGLGLTILRG VMEVRKSKIW  720
ARFTVEANRD VTRMEIFLSL VRLLEPNCDG SGPAENANNA NMPLGLVHQP VIPATGRIQ
Cis-element ? help Back to Top
SourceLink
PlantRegMap462899575
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008679687.10.0transcription factor LHW
TrEMBLK7V4F40.0K7V4F4_MAIZE; Putative HLH DNA-binding domain superfamily protein
STRINGGRMZM2G158281_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26543242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31280.14e-55conserved peptide upstream open reading frame 7