PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462899239
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family SBP
Protein Properties Length: 224aa    MW: 23906 Da    PI: 10.4256
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462899239genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP75.58.8e-24106169177
                --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
        SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                +CqvegC++ l+ akeyhrrhkvCe+hskap v+v g eqrfCqqCsr             CrrrLa+hnerrrk++
  462899239 106 RCQVEGCHVALAGAKEYHRRHKVCEAHSKAPRVVVLGAEQRFCQQCSR-------------CRRRLAGHNERRRKSN 169
                6**********************************************9.............**************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.8E-23100155IPR004333Transcription factor, SBP-box
PROSITE profilePS5114123.376104168IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.7E-27105171IPR004333Transcription factor, SBP-box
PfamPF031101.3E-17107167IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MEGNGGGSGT ATPGWDLGMH WAPAGSSGYP LAPRAGGKHH YEQQEQQAWL NLGKRPCCWA  60
GGGCQVATQP GGLGVGHHAH GDGGAGRAAA AESRGRKEKA AAAVPRCQVE GCHVALAGAK  120
EYHRRHKVCE AHSKAPRVVV LGAEQRFCQQ CSRCRRRLAG HNERRRKSNA SEAMARSAAH  180
PHGTHLRTCV DPSASSLLAV YPIWSKRLFK DVKIKLRQGP SYSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-191071671184squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462899239
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0542384e-63BT054238.1 Zea mays full-length cDNA clone ZM_BFb0189E24 mRNA, complete cds.
GenBankBT0546544e-63BT054654.2 Zea mays full-length cDNA clone ZM_BFb0036O05 mRNA, complete cds.
GenBankEU9646564e-63EU964656.1 Zea mays clone 280651 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025824676.14e-57squamosa promoter-binding-like protein 7
SwissprotQ7XT423e-50SPL7_ORYSJ; Squamosa promoter-binding-like protein 7
TrEMBLA0A0A9F9312e-62A0A0A9F931_ARUDO; Uncharacterized protein
STRINGTraes_2BL_69E6AB6D1.21e-56(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP103033439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27370.49e-14squamosa promoter binding protein-like 10
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]