PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462898196
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family C3H
Protein Properties Length: 85aa    MW: 9254.81 Da    PI: 8.4996
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462898196genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.13.1e-081181027
               GGTS--TTTTT-SS-SSS CS
    zf-CCCH 10 artGtCkyGdrCkFaHgp 27
               +++G Ck+G  CkF+H++
  462898196  1 MKSGDCKFGVVCKFHHPK 18
               89**************96 PP

2zf-CCCH27.26.8e-093961224
               -S---SGGGGTS--TTTTT-SS- CS
    zf-CCCH  2 ktelCrffartGtCkyGdrCkFa 24
               ++++C f++r+G C +G++CkF+
  462898196 39 GEPICTFYSRNGMCMFGSKCKFN 61
               579*******************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501039.188119IPR000571Zinc finger, CCCH-type
PfamPF006425.1E-5118IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.7843865IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-53961IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-54063IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.8E-44260IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 85 aa     Download sequence    Send to blast
MKSGDCKFGV VCKFHHPKDR TVPVPNCALS STELPLCLGE PICTFYSRNG MCMFGSKCKF  60
NNPIQAVIYI TASSPASEVP TARPQ
Cis-element ? help Back to Top
SourceLink
PlantRegMap462898196
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025827472.19e-35zinc finger CCCH domain-containing protein 63 isoform X1
RefseqXP_025827474.12e-34zinc finger CCCH domain-containing protein 63 isoform X2
RefseqXP_025827475.12e-34zinc finger CCCH domain-containing protein 63 isoform X3
RefseqXP_025827476.12e-34zinc finger CCCH domain-containing protein 63 isoform X4
SwissprotQ2R4J45e-32C3H63_ORYSJ; Zinc finger CCCH domain-containing protein 63
TrEMBLA0A0A9E2W98e-38A0A0A9E2W9_ARUDO; Uncharacterized protein
TrEMBLA0A0A9ESB32e-37A0A0A9ESB3_ARUDO; Uncharacterized protein
STRINGPavir.J23327.1.p2e-33(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.12e-29zinc finger protein 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]