PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462898193
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family C3H
Protein Properties Length: 271aa    MW: 30874.2 Da    PI: 10.039
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462898193genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH322e-10187209527
                --SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                +Crf+++t  Ck+G  CkF+H++
  462898193 187 ECRFYMKTRDCKFGVICKFHHPK 209
                7********************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902297.65E-5183211IPR000571Zinc finger, CCCH-type
PfamPF006427.4E-8187209IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.643187210IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
LVSHPQTTNN GRLEVLNTIP AQDGVKQLAW AGSVPVGLYV VQRENVFLDR LECRFYMKTR  60
DFQSNYPYTR ESPYALSRPS TCKTLVKKSD GGTKNKVVRA SIFTTPVQFL GQESVENTCT  120
RVCAHTHTGI LVLRRLVPHP QTTNNGRLDV PNTTLAHGGM KQLERASSVP VGFYAVQREN  180
VFLDRLECRF YMKTRDCKFG VICKFHHPKD RTVHIGSSSL DDQQRTTGGA QYYTSSCWSE  240
TTGKGNPRMF SSFKLALFQL DLIQYRRRMY F
Cis-element ? help Back to Top
SourceLink
PlantRegMap462898193
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16540.31e-17zinc finger nuclease 3