PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462897569
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family bHLH
Protein Properties Length: 404aa    MW: 45684.8 Da    PI: 5.499
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462897569genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.72e-13194241355
                HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                ++h + ErrRR+++N+ ++ L++l+P+       +++Ka+iL +++ Y+k+L+
  462897569 194 KNHVMSERRRREKLNEMYAVLKSLVPTT-----HRMDKASILAETITYLKELE 241
                5899***********************7.....59***************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.139191240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.01E-14194245No hitNo description
SuperFamilySSF474597.46E-18194255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-17195253IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.7E-11195241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.6E-16197246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MADSKTFPRK LLAKVLEDSD LLNSATTYFN ELKFPRCTEN SLANQTRETN YNIIVHDDLD  60
QNATETITAD GNELDEVDCL FNANHDQITA VVDDFYGLWE ELLDIQTLHD TNLIMDGSSL  120
VAAPEAKDAA TSSIPEDSSC VTHFINWTRS DSYERVVPVI EEPQKLLKKV VAAGAWMNNT  180
VESTARTTHE RGIKNHVMSE RRRREKLNEM YAVLKSLVPT THRMDKASIL AETITYLKEL  240
EQKVKELESR RESISIPDDK RPTCHENEIT AKRIPARTKR KKASKLGNGM EMEHHWVFSK  300
DGPSKVNVTV IGTEVLLEVQ CQWKELLMTH VFDTIKSLDL DVLSVEASTP NHVMGLKIRA  360
QFASPNPFQP GIISEALRRA ITNNSRDIKI PKGIPSDEKE AEML
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1199204ERRRRE
2200205RRRREK
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator. Control tissue-specific synthesis of anthocyanin pigments in various parts of the maize plant.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462897569
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025823475.11e-123anthocyanin regulatory R-S protein-like isoform X2
SwissprotP130272e-80ARRS_MAIZE; Anthocyanin regulatory R-S protein
TrEMBLA0A2T7CYI51e-126A0A2T7CYI5_9POAL; Uncharacterized protein
STRINGSi000845m1e-117(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP93233109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63650.32e-27bHLH family protein
Publications ? help Back to Top
  1. Pattanaik S,Xie CH,Yuan L
    The interaction domains of the plant Myc-like bHLH transcription factors can regulate the transactivation strength.
    Planta, 2008. 227(3): p. 707-15
    [PMID:18075757]
  2. Huang ZA, et al.
    The upregulation of NtAN2 expression at low temperature is required for anthocyanin accumulation in juvenile leaves of Lc-transgenic tobacco (Nicotiana tabacum L.).
    J Genet Genomics, 2012. 39(3): p. 149-56
    [PMID:22464474]
  3. Perrot GH,Cone KC
    Nucleotide sequence of the maize R-S gene.
    Nucleic Acids Res., 1989. 17(19): p. 8003
    [PMID:2798145]
  4. Li P, et al.
    Combined bulked segregant sequencing and traditional linkage analysis for identification of candidate gene for purple leaf sheath in maize.
    PLoS ONE, 2018. 13(1): p. e0190670
    [PMID:29304111]