PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462897548
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family bHLH
Protein Properties Length: 1221aa    MW: 136684 Da    PI: 5.3707
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462897548genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.88.3e-13399446355
                HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                ++h + ErrRR+++N+ f  L++l+P+        K++Ka+iL +++ Y+k+L+
  462897548 399 KNHVMSERRRREKLNEMFLILKSLVPTiH------KVDKASILAETIAYLKELE 446
                5799***********************66......****************996 PP

2HLH39.78.7e-1310371084355
                 HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
        HLH    3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55  
                 ++h + ErrRR+++N+ f  L++l+P+        K++Ka+iL +++ Y+k+L+
  462897548 1037 KNHVMSERRRREKLNEMFLVLKSLVPTiH------KMDKASILAETIAYLKELE 1084
                 5799***********************66......****************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.4E-4526223IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.24396445IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-17399462IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.07E-13399443No hitNo description
Gene3DG3DSA:4.10.280.109.0E-17400456IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.1E-10400446IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.1E-16402451IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF142152.3E-22574687IPR025610Transcription factor MYC/MYB N-terminal
PfamPF142152.3E-33714859IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.53310341083IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.49E-1510371088No hitNo description
SuperFamilySSF474594.97E-1810371100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.0E-1810381097IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.2E-1010381084IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.4E-1610401089IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010026Biological Processtrichome differentiation
GO:0010214Biological Processseed coat development
GO:2000029Biological Processregulation of proanthocyanidin biosynthetic process
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 1221 aa     Download sequence    Send to blast
MRNITAMALP AASSQLQEEP QQGNQLTNQL AAAVRSINWS YALFWSVSST HPGVLTWMDG  60
FYNGEIKTRK ISHSAELTAD QLVMQRSEQL RELYRSLLSG ECDHRAARPV AALSPDELGE  120
TEWYYVVCMT YAFRPGQGYV PLPGKSFASN EHVWLCNAHL PDSKTFPRVL LEKISECSLQ  180
LHFELYFLQT VVCIPLMSGV LELGTTDSVT EDPDLVSRVT TSFWDRQFGT ISVERSSSPS  240
ANVTSEDDDR IVFEDLDHNA METMIAGAKE LGDVEILSNT SLEHATKGID EFYSLCEELD  300
VQPLEDDWIM DGSFEIPCSP VVAASGAAIN DANNVSTPVD RMTSFMKWTG AADSDEVAVV  360
PVVGEAQKLL KKVVAGGAWE SSGGGGSTTR SATQESGIKN HVMSERRRRE KLNEMFLILK  420
SLVPTIHKVD KASILAETIA YLKELERRVE ELESTSREPI MQPSGTARLR GKGHINGSTG  480
KRVCEAKRKA MDTEHQLHHC VPSKDGSSNV TVTVTDKDVL LEVQCRWEEL LITRVFDAMK  540
TLHLDVLSVQ ASTPDGFMGL KIRAQEEQHP DMHLRSQLAA AVRSINWSYA IFWSISSSHP  600
RALTWKDGFY NGEIKTRKIA NSMELTAEQL ILQRSEQLLE LYESFLSGRC DHRMGRPVAA  660
LSPEDLGSTE WYYVVCMTYV FSPGQGCEKF ASSLGMELSA HPLVQEEQHP DMHLRSQLAA  720
AVRSINWSYA IFWSISSSHP GALTWKDGFY NGEIKTRKIA NSMELTAEQL ILQRSEQLLE  780
LYESFLSGRC DHRMGRPVAA LSPEDLGSTE WYYVVCMTYV FSPGQGLPGR CFASNEHVWL  840
CNAHLADSKQ DFPRALLAKV PEDPDLLTRA ITYFKELKLP RCAGNPSTNH VEATNVIVLY  900
DLDEDAMETT IAEGREIGEV DCLFSGSLDQ ITKEIHDSYG LWEEVDVQPL QYSDWIMDSL  960
LAGQEANKDD DATLNTHGDS SRATSFTPWT RFQSDELAVR VIREPQKFLK RVVAGGAWTN  1020
NNGGESTART PQESGIKNHV MSERRRREKL NEMFLVLKSL VPTIHKMDKA SILAETIAYL  1080
KELERRVKEL ESRREGISRP GETRPRSHDN FPARAKRKKA SELSGDMEME HHWVLSKDGP  1140
SNVNVTVMGT EVLLEVQCRW KELLMTRVLD TIKSLSLDVL SVEASTKDCL MGLKIRAQFS  1200
SSAAISPAMI REALWRAIAN H
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rru_A8e-172621948227Transcription factor MYC3
4ywc_A8e-172621948227Transcription factor MYC3
4ywc_B8e-172621948227Transcription factor MYC3
5t0f_A4e-17262199188Transcription factor MYC3
5t0q_A4e-17262199188Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
110421047ERRRRE
210431048RRRREK
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator. Control tissue-specific synthesis of anthocyanin pigments in various parts of the maize plant.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462897548
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5423112e-66AY542311.1 Sorghum bicolor clone SB20O07 b1-1, b1-2, putative genetic modifier, hypothetical protein, putative NAM protein, putative cis-zeatin O-glucosyltransferases, putative small nuclear ribonucleoprotein, putative cis-zeatin O-glucosyltransferase, putative glutathione peroxidase, putative copper-exporting ATPases, putative serine/threonine dehydratase, and putative actin depolymerizing factor genes, complete cds; and hypothetical protein gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025823475.10.0anthocyanin regulatory R-S protein-like isoform X2
SwissprotP130270.0ARRS_MAIZE; Anthocyanin regulatory R-S protein
TrEMBLA0A2S3I9980.0A0A2S3I998_9POAL; Uncharacterized protein
STRINGSi000845m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP93233109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.14e-66bHLH family protein
Publications ? help Back to Top
  1. Pattanaik S,Xie CH,Yuan L
    The interaction domains of the plant Myc-like bHLH transcription factors can regulate the transactivation strength.
    Planta, 2008. 227(3): p. 707-15
    [PMID:18075757]
  2. Huang ZA, et al.
    The upregulation of NtAN2 expression at low temperature is required for anthocyanin accumulation in juvenile leaves of Lc-transgenic tobacco (Nicotiana tabacum L.).
    J Genet Genomics, 2012. 39(3): p. 149-56
    [PMID:22464474]
  3. Perrot GH,Cone KC
    Nucleotide sequence of the maize R-S gene.
    Nucleic Acids Res., 1989. 17(19): p. 8003
    [PMID:2798145]
  4. Li P, et al.
    Combined bulked segregant sequencing and traditional linkage analysis for identification of candidate gene for purple leaf sheath in maize.
    PLoS ONE, 2018. 13(1): p. e0190670
    [PMID:29304111]