PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462897023
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family bHLH
Protein Properties Length: 878aa    MW: 95447 Da    PI: 6.6975
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462897023genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.30.000646777141355
                HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
        HLH  13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                R+ i +++ eLrel+P+ a      K s  + Lek+v+++  Lq
  462897023 677 RQLIQDRIKELRELVPNgA------KCSIDALLEKTVKHMLFLQ 714
                67799************66......999999********99998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.4E-241143IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000830.00562658714No hitNo description
PROSITE profilePS5088810.487664713IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.0E-4677722IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 878 aa     Download sequence    Send to blast
YAVFWKAIGA ADPVHLVWED GYCGHTSCPA GSEPSEALPT EVGCSAADGT MCSLVKKVMA  60
SQVHVVGEGT VGRAAFTGNH QWIVYGTANG HGLSSEVAAE MNNQFKAGIQ TIAIIPVLPR  120
GVLQLGSTGL VMENTNFVMY AKKLCSQLNN RSGMTASASV KNASSQHGQP RPSHGAFHVQ  180
SDDHCSKISS RFPVASELRS CPDTATMSSS TSSSAFLNAS LLEDVQQDGR PFREHTFHAK  240
PDVRLEQQTP YCKSRFGSST QRADASSALI SPSLSSVQKQ SLLFSNAGLL GSGNNADLAR  300
NILLQSIVYR NSSVYENTNI NTAHGRYEVY NGGHGPANFD FLPGVGRLVR DTSLLSQVTD  360
ERCHSISGAL LQKQPVVPQL SEFSMKMDNP ERGPFQNPSA PSSVSDGQVS NSFNTIHGQD  420
DQLDRSDHIH QGQLMTDSSA HVSTQRMKNG DAHRLPDMPG ERVSSLVVDP PPDNDLFDIF  480
GAEFQQFSHN SGADLVSWSG PKSQSSDRDV PESSIYFDRS PLFSSLDNDF PYSGNFSLTD  540
TDQLLDAVIS NTNPGGKQSP VDSASCKTSL TDIPSSSHLG EKGLKQYEST GIPSVLIKHE  600
SAQIVKQPCF FDKPEDGCLS QNNGGHKSQI RLWIESGQNR KCESASASNS KGLDTPSKTN  660
RKRSRPGESA KPRPKDRQLI QDRIKELREL VPNGAKCSID ALLEKTVKHM LFLQSVTKHA  720
DKLKNSTESK ILGGENGPLW KDYFEGGATW AFEVGSQSMT CPIIVEDLDR PRQMLVEMLC  780
EDRGIFLEIA DFIKGLGLTI LRGVMEVRKS KIWARFTVEA NRDVTRMEIF LSLVRLLEPN  840
CDGSGAAENA NNVKMPLGLV HQPVIPATGL SPLFLYKL
Cis-element ? help Back to Top
SourceLink
PlantRegMap462897023
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004978745.10.0transcription factor LHW
TrEMBLA0A1E5WE570.0A0A1E5WE57_9POAL; Transcription factor LHW
STRINGSi025960m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26543242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31280.12e-55conserved peptide upstream open reading frame 7