PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462896440
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family C3H
Protein Properties Length: 207aa    MW: 23434.1 Da    PI: 7.4769
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462896440genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH391.3e-126590126
               --S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
               y   +C+++ +tG+C yGd+CkF+H+
  462896440 65 YQPDICKDYKETGYCGYGDSCKFMHD 90
               67789********************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902298.5E-106295IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-76491IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.8786492IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-106590IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.3E-136595IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.106.2E-14135184IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF578501.66E-13142185No hitNo description
PfamPF139209.7E-9142183No hitNo description
SMARTSM001841.6E-4143180IPR001841Zinc finger, RING-type
PROSITE profilePS5008910.527143181IPR001841Zinc finger, RING-type
CDDcd001626.86E-7143184No hitNo description
PROSITE patternPS005180158167IPR017907Zinc finger, RING-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
AEESLKKNPS GSGSGKGEVY KGIHGYTDHK AGFRREHTVS SEKAGGSHGP LRASAHIRLT  60
ARFDYQPDIC KDYKETGYCG YGDSCKFMHD RGDYKSGWQL EKEWEEAEKA RKRRIAMRGA  120
DGSDDEAAED DSDEDEEALP FACFICRQPF VDPVVTKCKH YFCEHCALKH HSKNKKCFVC  180
NKPTLGIFNA AQEIRKKMAE DKKQQQD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5z56_M4e-5619198152317RING finger protein 113A
5z58_M4e-5619198152317RING finger protein 113A
6ff4_t4e-5619198152317RING finger protein 113A
6ff7_t4e-5619198152317RING finger protein 113A
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap462896440
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020156391.11e-136zinc finger CCCH domain-containing protein 15
SwissprotQ6K4V31e-117C3H15_ORYSJ; Zinc finger CCCH domain-containing protein 15
TrEMBLA0A3B6JMH31e-134A0A3B6JMH3_WHEAT; Uncharacterized protein
TrEMBLA0A453IHI91e-134A0A453IHI9_AEGTS; Uncharacterized protein
TrEMBLR7W9H91e-133R7W9H9_AEGTA; Zinc finger CCCH domain-containing protein 15
STRINGEMT145291e-134(Aegilops tauschii)
STRINGTraes_4DL_4C78C56A4.11e-134(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80713645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.12e-97C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]