PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462896327
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family C3H
Protein Properties Length: 773aa    MW: 84212.6 Da    PI: 6.1969
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462896327genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.98.6e-094472125
               --S---SGGGGTS....--TTTTT-SS-S CS
    zf-CCCH  1 yktelCrffartG....tCkyGdrCkFaH 25
               +kt+lC+ff+r G     C++Gd+C++aH
  462896327 44 WKTSLCSFFRRRGagaeGCSHGDSCRYAH 72
               8**************************** PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.1E-124080IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.73E-64179IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.8174375IPR000571Zinc finger, CCCH-type
SMARTSM003565.3E-44374IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-64472IPR000571Zinc finger, CCCH-type
CDDcd005904.09E-4120187No hitNo description
Gene3DG3DSA:3.30.70.3306.0E-6122196IPR012677Nucleotide-binding alpha-beta plait domain
SuperFamilySSF549284.16E-6123198IPR012677Nucleotide-binding alpha-beta plait domain
PROSITE profilePS5168717.03234721IPR010280(Uracil-5)-methyltransferase family
PfamPF059584.7E-7610656IPR010280(Uracil-5)-methyltransferase family
Gene3DG3DSA:3.40.50.1501.7E-19610660IPR029063S-adenosyl-L-methionine-dependent methyltransferase
PROSITE patternPS012300616648IPR030390RNA methyltransferase TrmA, active site
Gene3DG3DSA:3.40.50.1501.7E-19695716IPR029063S-adenosyl-L-methionine-dependent methyltransferase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006396Biological ProcessRNA processing
GO:0000166Molecular Functionnucleotide binding
GO:0008173Molecular FunctionRNA methyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 773 aa     Download sequence    Send to blast
MEEENTPKRK REELSPDASI EEASAASLGG EDASTNGGSR HPMWKTSLCS FFRRRGAGAE  60
GCSHGDSCRY AHTEEELRPR PDGTWDPTSE RAKKLRKVAE EAQEEAEEKV TVDEQSLDKC  120
LVGLPRGWTA DRLKAFLNDQ ASGISYATAK KKKGMTVGFV TFESIEQLKN AIQVLKENPS  180
GEKEIKIADA NRRSHRPVAY NGTSTENSSN PATGAGETSA PEVAGSGKKS ACDAVTPLAH  240
MSYKDQLEHK KHSMAQILKR LTRNARKACP STVPLPNWVF KSKEIGGLPC KLEGILESPV  300
VNGYRNKCEF SVGYSLEGKK TVGFMLGNFS NNEWSHKILG KVREGRSPAQ PVSQNAESQI  360
SEVMLIVQVC STGVDEALMK EEFDKLSAAL LQGAATCSPP LPLTAMVVQD HKGISNAAPA  420
DCPLIPLLMP KEGDQLESGA EDKTRIHDHI SNLKFSISPT AFFQAEDVMG SLLTEYLASD  480
NNSVISDTSK TGDILDRSES NGESVDGSTQ KSDNGESQQP RDTPVDHPTC ASDGEIKGNS  540
VDRVDKEVDG SHSEYDDSDG EQKCGEASSV NDESIKEALT ESLEHSKTCR DDSTTPKSDI  600
LDSTACQFKN VVAIVDPPRV GLHPTVIKAL RTHPRIRRLV YISCNPDSLV ANAIELCTPT  660
AEKQEKNKGN RGWRNMSSAG LARQRTKSMP NSEPFVPKRA MAVDLFPHTS HCEMMSVEMG  720
RRRQYTSLEA ALTLAVLRSC RSPILDTIVV HGGPLPPIIL TSLEMHSLLK IQQ
Cis-element ? help Back to Top
SourceLink
PlantRegMap462896327
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7269831e-140KJ726983.1 Zea mays clone pUT3684 C3H transcription factor (C3H10) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006652071.20.0PREDICTED: zinc finger CCCH domain-containing protein 24
TrEMBLA0A1D6EFY40.0A0A1D6EFY4_MAIZE; Zinc finger CCCH domain-containing protein 24
STRINGLPERR04G00120.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP84933131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28450.11e-176C3H family protein