PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462895668
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family bHLH
Protein Properties Length: 142aa    MW: 15083.1 Da    PI: 11.2541
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462895668genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.81.9e-083979954
               HHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
        HLH  9 ErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                r+RR+ri +++  L++l+P  a      K++ a++L +A +Y++ L
  462895668 39 ARQRRERISERLRVLQKLVPGgA------KMDTASMLDEAANYLRFL 79
               69******************966......***************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.8693079IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.0E-133685IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.35E-113684No hitNo description
SuperFamilySSF474592.49E-143690IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.0E-123888IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-53979IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    Send to blast
MRPVSLGPGA GDEELQAAAG ERPRRRNVRI SSDPQTVAAR QRRERISERL RVLQKLVPGG  60
AKMDTASMLD EAANYLRFLK SQVRELQTLD RRNYGSNAVM AGGPAVSFNG GNGVPPFAFP  120
GPAAAETLRG GLAAGGGVEQ QI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13944RQRRER
Cis-element ? help Back to Top
SourceLink
PlantRegMap462895668
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0031411e-74AP003141.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0002B05.
GenBankAP0032961e-74AP003296.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0697C12.
GenBankAP0149571e-74AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126091e-74CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002458018.12e-54putative lysozyme-like protein
RefseqXP_021311497.12e-54putative lysozyme-like protein
SwissprotQ8S3D24e-32BH087_ARATH; Transcription factor bHLH87
TrEMBLA0A287KZ724e-54A0A287KZ72_HORVV; Uncharacterized protein
STRINGSb03g025570.17e-54(Sorghum bicolor)
STRINGTraes_3B_E1F2693CD.11e-56(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP154637106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.19e-25bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]