PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462895392
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family bHLH
Protein Properties Length: 174aa    MW: 19045 Da    PI: 7.9783
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462895392genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH52.58.6e-17109155455
                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 hn  E+rRR+riN+++  L++l+P++      K +Ka++L +A+eY+k+Lq
  462895392 109 VHNLSEKRRRSRINEKMKALQSLIPNS-----NKTDKASMLDEAIEYLKQLQ 155
                6*************************7.....5******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.2E-19102163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.63E-20102165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.063105154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.21E-19108159No hitNo description
PfamPF000103.0E-14109155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.3E-18111160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MHEQGLGGFG GSRAAVQGHG GRDAMLFLQQ HHHQQQQRQQ QQQLEEAEEE EARRQMFAGV  60
AFPGALGYGH QAEEAGGLGD SDAGGSEPEP APSRARGGSG SKRSRAAEVH NLSEKRRRSR  120
INEKMKALQS LIPNSNKTDK ASMLDEAIEY LKQLQLQVQV SKQYLSARLG SGDW
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9696891e-81EU969689.1 Zea mays clone 334086 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001131794.15e-56putative HLH DNA-binding domain superfamily protein
RefseqXP_008658091.15e-56PREDICTED: putative HLH DNA-binding domain superfamily protein isoform X1
RefseqXP_008658092.13e-56PREDICTED: putative HLH DNA-binding domain superfamily protein isoform X2
SwissprotO805361e-30PIF3_ARATH; Transcription factor PIF3
TrEMBLB4FE225e-56B4FE22_MAIZE; BHLH transcription factor
STRINGGRMZM2G017349_P011e-55(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33363776
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.19e-22bHLH family protein