PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462894179
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family bZIP
Protein Properties Length: 242aa    MW: 25940.9 Da    PI: 5.9799
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462894179genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_130.76.8e-1096143451
                XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkelee 51 
                + r r+   NReA r++R++Kka  + Lee+vk+L a N++L  +l++
  462894179  96 STRPRKPLGNREAVRKYREKKKAHAAFLEEEVKKLRATNQQLLRRLQS 143
                567788899*********************************988875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1704.4E-1591161No hitNo description
SMARTSM003381.7E-892160IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.81895161IPR004827Basic-leucine zipper domain
PfamPF077162.1E-1295150IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.56E-799145No hitNo description
CDDcd146865.01E-13100151No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MLSSFSFALK QKIVLGAFSV PMDGGGADLS CQYLFSHPEM PDSSDEFLNS ATTTCFHTHS  60
CNPPSTSAAA HTHTCLHTHT QVCAGGGEDD DAREDSTRPR KPLGNREAVR KYREKKKAHA  120
AFLEEEVKKL RATNQQLLRR LQSHAALEAE VVRLRSLLLD VRSKIDAETS AFPFPNQCSV  180
GSVVGADQAL CFNGNSEVGG GTWDESCRPA AVDCGIDEGG GVSREIGISE AVHSMDTVAG  240
FG
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the response to zinc ion deficiency. Binds to the consensus sequence 5'-[AG]TGTCGACA[CT]-3' also called zinc deficiency response element (ZDRE). The ZDRE sequence is conserved in the plant kingdom and present in the promoters of genes that constitute the primary response to zinc deficiency, comprising additional ZIP metal transporter genes (PubMed:20479230, PubMed:26306426). Required for zinc accumulation in roots. Mediates the expression of the zinc transporter ZIP12 during growth in zinc-deficient conditions. ZIP12 transporter is involved in zinc uptake in roots (PubMed:26306426). {ECO:0000269|PubMed:20479230, ECO:0000269|PubMed:26306426}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by zinc deficiency. {ECO:0000269|PubMed:20479230}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001142351.11e-101uncharacterized protein LOC100274522
RefseqXP_020394445.11e-101putative bZIP transcription factor superfamily protein isoform X1
RefseqXP_020394446.11e-101putative bZIP transcription factor superfamily protein isoform X1
RefseqXP_020394447.11e-101putative bZIP transcription factor superfamily protein isoform X1
RefseqXP_020394448.11e-101putative bZIP transcription factor superfamily protein isoform X1
RefseqXP_020394449.11e-101putative bZIP transcription factor superfamily protein isoform X1
SwissprotQ8GTS21e-44BZP23_ARATH; Basic leucine zipper 23
TrEMBLA0A0A9S3G71e-109A0A0A9S3G7_ARUDO; Uncharacterized protein
STRINGGRMZM2G175870_P011e-101(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38313675
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16770.19e-26bZIP family protein
Publications ? help Back to Top
  1. Azevedo H, et al.
    Transcriptomic profiling of Arabidopsis gene expression in response to varying micronutrient zinc supply.
    Genom Data, 2016. 7: p. 256-8
    [PMID:26981422]
  2. Castro PH, et al.
    Phylogenetic analysis of F-bZIP transcription factors indicates conservation of the zinc deficiency response across land plants.
    Sci Rep, 2017. 7(1): p. 3806
    [PMID:28630437]
  3. Nazri AZ,Griffin JHC,Peaston KA,Alexander-Webber DGA,Williams LE
    F-group bZIPs in barley-a role in Zn deficiency.
    Plant Cell Environ., 2017. 40(11): p. 2754-2770
    [PMID:28763829]
  4. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]