PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462893931
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family ERF
Protein Properties Length: 303aa    MW: 32747.6 Da    PI: 7.8418
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462893931genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.24.1e-1850100155
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                s++ GVr+++ +grWvAeI+d +   ++ r +lg+f tae Aaka+++a++ l+g
  462893931  50 SKFVGVRQRP-SGRWVAEIKDTT---QKIRMWLGTFETAEAAAKAYDEAARLLRG 100
                79********.7*********32...35***********************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.5E-1250100IPR001471AP2/ERF domain
CDDcd000181.50E-1650108No hitNo description
SuperFamilySSF541719.81E-1950109IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.4E-2751108IPR001471AP2/ERF domain
SMARTSM003802.2E-3351114IPR001471AP2/ERF domain
PROSITE profilePS5103219.91551108IPR001471AP2/ERF domain
PRINTSPR003675.8E-75263IPR001471AP2/ERF domain
PRINTSPR003675.8E-77490IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MELHFQVQPP VPFQVEDYSY YYYYQQEAAA QANKQPGKPR GRKKGSNNHS KFVGVRQRPS  60
GRWVAEIKDT TQKIRMWLGT FETAEAAAKA YDEAARLLRG ADTRTNFAPR ISPDCPLAVR  120
IRGLLHHKKV KKAKAKSAAA ASAGASKHKA PSSPAAPAAS NYSNSDSNSA CGGASSSSSS  180
CDDAVKHVGG EMDAGEVYRP DFAPMAAEEF DSWMFDSAFG QFPALDGCFP AAVDSAVPAA  240
APAPEQPRAA PAPAGEMAEF ERIKVERRIS ASLYAMNGLQ EYFDRVFDAS ACDSLWDLSP  300
LCH
Cis-element ? help Back to Top
SourceLink
PlantRegMap462893931
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0404151e-133BT040415.1 Zea mays full-length cDNA clone ZM_BFc0090C04 mRNA, complete cds.
GenBankJX4699531e-133JX469953.1 Zea mays subsp. mays clone UT3215 AP2-EREBP-type transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020148323.11e-117ethylene-responsive transcription factor RAP2-11
TrEMBLK3ZVQ51e-120K3ZVQ5_SETIT; Uncharacterized protein
STRINGSi030686m1e-121(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39003273
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.11e-25related to AP2 11