PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462893346
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family bHLH
Protein Properties Length: 362aa    MW: 38923.1 Da    PI: 8.1542
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462893346genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.76.3e-06921241855
                HHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH  18 safeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 af+ L+ +lP+       K +K +iL +A eYI+sL+
  462893346  92 GAFHALKAVLPPG-----SKKDKTSILIRAREYIRSLE 124
                5899999999995.....5999**************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.01774123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.002980129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.64E-585124No hitNo description
SuperFamilySSF474593.93E-885142IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.7E-893143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MDDEAVVYDG ALDMAAPHPV VVDGLLDHPH HGRSFPTSSS SSSISLRSAS LSCSPTSSAH  60
YANNAQLPAA KRGAFKSYAR HLGPRRQQQK PGAFHALKAV LPPGSKKDKT SILIRAREYI  120
RSLESKASEL EEKNNSLETR LAQRGSGGGD DDEKVQIEIT RAAKEEEPPV DPRDICTLKI  180
VVRSRCNMTD VVLRTLQCLK EQVGEDVNLV SMNTSSGAGA GPSRSCSSPR AVLTMQIKIE  240
ITRAAKEEEP PVDPRDICTL KIVVRSRCNM TDVVLRTLQC LKEQVGEDVN LVSMNTSSGA  300
GAGPSRSCSS PRAVLTMQIK SPGANWDEQP VKDAVAKVVA DALTLPKSPP SARLLQQEAD  360
AN
Cis-element ? help Back to Top
SourceLink
PlantRegMap462893346
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004971740.13e-51putative transcription factor bHLH041
TrEMBLA0A1E5WNJ42e-56A0A1E5WNJ4_9POAL; Uncharacterized protein
STRINGSi001328m1e-50(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29003182
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.16e-07bHLH family protein