PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462892761
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family bHLH
Protein Properties Length: 231aa    MW: 24336.3 Da    PI: 8.0642
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462892761genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH223e-0776103430
                HHHHHHHHHHHHHHHHHHHHHCTSCC.C CS
        HLH   4 ahnerErrRRdriNsafeeLrellPk.a 30 
                ++  +ErrRR+r+N+ +  Lr+++P+  
  462892761  76 SNTVMERRRRRRLNDTLYALRSVVPNiT 103
                67899********************955 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.46472129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.81E-875120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.2E-576103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.1E-677106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MDSAAGDSFA CFWDCFDTQG LQSLYIDDGN SAVSGGQHHD GYSRAPDAAG CNYYSSSAAA  60
ATGTPTAASR QGNNNSNTVM ERRRRRRLND TLYALRSVVP NITKLQQLER RLLAEISLLE  120
SAASTHPLLV STPPSMDDDC AVSPTKKVKM ALSPSSAASH CSASPPVDAL EVRVSGAGDK  180
VLVVSIVCGH RRDAVAKVCR ALEGLRLRIF AANVTAAAGT VTHTALVQFG P
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18087ERRRRRRL
28186RRRRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMap462892761
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002452037.13e-69transcription factor bHLH35 isoform X1
TrEMBLC5Y1317e-68C5Y131_SORBI; Uncharacterized protein
STRINGSb04g017390.11e-68(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104438133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.34e-13bHLH family protein