PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462891596
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family AP2
Protein Properties Length: 572aa    MW: 63857.5 Da    PI: 5.4519
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462891596genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.91.1e-17126175255
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                +++G+r+++ +g+W+AeIrdp++     r++lg++ ++eeAa+a++  +++++g
  462891596 126 QFRGIRRRP-WGKWAAEIRDPRK---GVRVWLGTYNSPEEAARAYDVEARRIRG 175
                69*******.**********954...4************************998 PP

2AP255.91.1e-17307356255
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                +++G+r+++ +g+W+AeIrdp++     r++lg++ ++eeAa+a++  +++++g
  462891596 307 QFRGIRRRP-WGKWAAEIRDPRK---GVRVWLGTYNSPEEAARAYDVEARRIRG 356
                69*******.**********954...4************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.75E-21126185IPR016177DNA-binding domain
CDDcd000181.18E-28126184No hitNo description
Gene3DG3DSA:3.30.730.103.9E-30126184IPR001471AP2/ERF domain
PROSITE profilePS5103223.762126183IPR001471AP2/ERF domain
SMARTSM003806.1E-35126189IPR001471AP2/ERF domain
PRINTSPR003672.4E-9127138IPR001471AP2/ERF domain
PfamPF008476.5E-11127175IPR001471AP2/ERF domain
PRINTSPR003672.4E-9149165IPR001471AP2/ERF domain
SuperFamilySSF541712.75E-21307366IPR016177DNA-binding domain
CDDcd000181.18E-28307365No hitNo description
Gene3DG3DSA:3.30.730.103.9E-30307365IPR001471AP2/ERF domain
PROSITE profilePS5103223.762307364IPR001471AP2/ERF domain
SMARTSM003806.1E-35307370IPR001471AP2/ERF domain
PfamPF008476.5E-11308356IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0070483Biological Processdetection of hypoxia
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 572 aa     Download sequence    Send to blast
MCGGAILKAG EGRKRRPRRA DDEELLKEES DEDFEADFEE FEVESGESEL ESDDDVKPVA  60
ATRSGVARGT TLYSKAMPQH IYHHTSSLSW SGEFLLISFL ADGLNTTPAG ADGAAARSAK  120
RKRKNQFRGI RRRPWGKWAA EIRDPRKGVR VWLGTYNSPE EAARAYDVEA RRIRGKKAKV  180
NFPDEVPVAS EKCRALPTSM KVPNLDTEEK PIIKPIKKKQ RKAGEGRKRR PRRADDEELL  240
KEESDEDFEA DFEEFEVESG ESELESDDDV KPVAATRSGV ARDGLNSTPA GADGAAARSA  300
KRKRKNQFRG IRRRPWGKWA AEIRDPRKGV RVWLGTYNSP EEAARAYDVE ARRIRGKKAK  360
VNFPDEVPVA SEKCRALPTS MKVPNLDTEE KPIIKPIVNN MTNSNAFSYP HELVVQPQNM  420
SFVPMANPAA PIQEHFMNLS SDQGSNSFSC SDFSRENDTR TPDITSVLAP IPILTQLDES  480
AFLQNTSNAV TPPVMENASV DVPDLEPYMN FLMDSGSDES MNTLLSCDGS QDVLSNMDLW  540
TFEDMPFSAV VSSVKAAISK PIWFAPRQNR DL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-191253711379Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1300314KRKRKNQFRGIRRRP
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional activator that may be involved in defense signaling pathway. Binds in vitro to the DNA sequence 5'-AGCCGCC-3' of the GCC-box element found in pathogenesis-related (PR) gene promoters. The transcriptional activation is enhanced in vitro by the presence of MPK12/BWMK1. {ECO:0000269|PubMed:12913152}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462891596
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015643752.11e-142ethylene-responsive transcription factor 1-like
SwissprotQ6K7E61e-115ERF1_ORYSJ; Ethylene-responsive transcription factor 1
TrEMBLA0A1E5UKA81e-146A0A1E5UKA8_9POAL; Ethylene-responsive transcription factor 1
STRINGPavir.Ia01229.1.p1e-142(Panicum virgatum)
STRINGOGLUM06G06300.11e-142(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP103938134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72360.18e-29ERF family protein
Publications ? help Back to Top
  1. Kim CY, et al.
    Identification of rice blast fungal elicitor-responsive genes by differential display analysis.
    Mol. Plant Microbe Interact., 2000. 13(4): p. 470-4
    [PMID:10755311]
  2. Koo SC, et al.
    OsBWMK1 mediates SA-dependent defense responses by activating the transcription factor OsWRKY33.
    Biochem. Biophys. Res. Commun., 2009. 387(2): p. 365-70
    [PMID:19607808]
  3. Iwamoto M,Takano M
    Phytochrome-regulated EBL1 contributes to ACO1 upregulation in rice.
    Biotechnol. Lett., 2011. 33(1): p. 173-8
    [PMID:20872166]
  4. Serra TS, et al.
    OsRMC, a negative regulator of salt stress response in rice, is regulated by two AP2/ERF transcription factors.
    Plant Mol. Biol., 2013. 82(4-5): p. 439-55
    [PMID:23703395]
  5. Jisha V, et al.
    Overexpression of an AP2/ERF Type Transcription Factor OsEREBP1 Confers Biotic and Abiotic Stress Tolerance in Rice.
    PLoS ONE, 2015. 10(6): p. e0127831
    [PMID:26035591]
  6. Lourenço TF, et al.
    The Rice E3-Ubiquitin Ligase HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENE1 Modulates the Expression of ROOT MEANDER CURLING, a Gene Involved in Root Mechanosensing, through the Interaction with Two ETHYLENE-RESPONSE FACTOR Transcription Factors.
    Plant Physiol., 2015. 169(3): p. 2275-87
    [PMID:26381316]