PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462891587
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family bHLH
Protein Properties Length: 291aa    MW: 31375.4 Da    PI: 5.1511
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462891587genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.22.6e-12141186555
                HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                h+++Er RR++i +++ +L++l+P++      K +Ka++L + ++Y+k Lq
  462891587 141 HSIAERLRREKISDRMKNLQDLVPNS-----NKADKASMLDEIIDYVKFLQ 186
                99***********************7.....5******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.22E-17134196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.38E-14134190No hitNo description
PROSITE profilePS5088817.212136185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-17138195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-9141186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.0E-14142191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MENSPDSYFS AWPPSESYGF AAASVQSYAE EGNMPPSSYF MNASSDHSLK DSKEFISGSL  60
PSFAMIQETN LPASAFKTQK QEQNVMCDFP VPAVAARNQM AVTATQGTLI PPKIQANSAN  120
GNGSGVKPRV RARRGQATDP HSIAERLRRE KISDRMKNLQ DLVPNSNKAD KASMLDEIID  180
YVKFLQLQVK VLSMSRLGAT GAVLPLLSES QTEDCGGQPL SATTTAHGLP DVQDSEDTLA  240
FEQEVVKLME SSITSAMQYL QNKGFCIMPV ALASAVSNQK GMDTAAIAPQ K
Cis-element ? help Back to Top
SourceLink
PlantRegMap462891587
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025812392.11e-131transcription factor bHLH110-like
SwissprotQ9LSQ33e-58BH082_ARATH; Transcription factor bHLH82
TrEMBLA0A1E5UK131e-130A0A1E5UK13_9POAL; Transcription factor bHLH69
STRINGPavir.Db01966.1.p1e-127(Panicum virgatum)
STRINGSb10g006250.11e-127(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32543879
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58010.11e-60LJRHL1-like 3
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Tam TH,Catarino B,Dolan L
    Conserved regulatory mechanism controls the development of cells with rooting functions in land plants.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(29): p. E3959-68
    [PMID:26150509]
  3. Zhang J, et al.
    Sperm cells are passive cargo of the pollen tube in plant fertilization.
    Nat Plants, 2017. 3: p. 17079
    [PMID:28585562]