PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462891488
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family bHLH
Protein Properties Length: 237aa    MW: 24043.8 Da    PI: 8.8815
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462891488genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH283.8e-0948861255
               HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
               RR+ri +++  L+el+P+a      K +Ka++L + ++Y+k Lq
  462891488 48 RRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 86
               ******************8.....6******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.573685IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.9E-84291IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.49E-134296IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-64886IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.43E-104890No hitNo description
Gene3DG3DSA:4.10.280.106.0E-134995IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MPAQSFGGGA AAGGGLGPAG EGRRHRGSSA CGRGGDKPRT LTASPNLRRE RIAERMKALQ  60
ELVPNANKTD KASMLDEIID YVKFLQLQVK VLSMSRLGGA SAVAPLVANM SSEGNGNGNG  120
TSNNGNGNTT NSNSNSENGG SSLRLTEQQV AKLMEEDMGS AMQYLQGKGL CLMPISLASA  180
ISSATSSSLL SRSSIHPMGG AGDTLHDGGS PASPPLVNGV GCDDSRTIKD AAAGGKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMap462891488
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269|PubMed:12679534}.
UniProtINDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002452977.11e-87transcription factor bHLH82 isoform X1
RefseqXP_021315043.11e-87transcription factor bHLH82 isoform X2
SwissprotQ9LSQ31e-60BH082_ARATH; Transcription factor bHLH82
SwissprotQ9ZUG95e-60BH066_ARATH; Transcription factor bHLH66
TrEMBLA0A0D9YZM25e-90A0A0D9YZM2_9ORYZ; Uncharacterized protein
STRINGOGLUM02G37030.19e-91(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141937118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.12e-47LJRHL1-like 1
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Tam TH,Catarino B,Dolan L
    Conserved regulatory mechanism controls the development of cells with rooting functions in land plants.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(29): p. E3959-68
    [PMID:26150509]
  4. Zhang J, et al.
    Sperm cells are passive cargo of the pollen tube in plant fertilization.
    Nat Plants, 2017. 3: p. 17079
    [PMID:28585562]