PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462891452
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family bZIP
Protein Properties Length: 229aa    MW: 24615.2 Da    PI: 5.1646
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462891452genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_147.15.1e-1598152357
                XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 
                ++kr rr+ +NRe+ArrsR+RK+a++ +L   +  L+aeN +L k+l   +++++
  462891452  98 SSKRLRRLLSNRESARRSRKRKQAQLNNLHSQISLLTAENASLLKRLADVTQKYK 152
                68******************************************99988888776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1703.1E-1392152No hitNo description
SMARTSM003387.2E-1496160IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.74998161IPR004827Basic-leucine zipper domain
PfamPF001701.9E-1299152IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.05E-10100151No hitNo description
CDDcd147021.04E-15101151No hitNo description
PROSITE patternPS000360103118IPR004827Basic-leucine zipper domain
PfamPF124984.3E-14160214IPR020983Basic leucine-zipper, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MADSSADEAV DAGGGQTSDP GAYAADLKRK LDLYCAAVAK TMEAKTQESS LDFSDSQASG  60
TSQLIFQASL DANIGTSKEQ SNDDGDLEEI TDPTDSTSSK RLRRLLSNRE SARRSRKRKQ  120
AQLNNLHSQI SLLTAENASL LKRLADVTQK YKEAAIDIQT MQRKVHIAEE AVRRVTGASM  180
LSPTTSDMLG SGVPFNSYLS DAASAAVPVE ESMQRSPRAI ASARDPDRA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1112118RRSRKRK
2112119RRSRKRKQ
3114119SRKRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds to the DNA specific sequence 5'-GCCACGT[AC]AG-3' found in the alpha-globulin gene promoter (PubMed:9049271, PubMed:11572990). Does not bind to promoters of other major storage genes such as glutelin, prolamin and albumin (PubMed:9049271). Binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters (PubMed:11133985). {ECO:0000269|PubMed:11133985, ECO:0000269|PubMed:11572990, ECO:0000269|PubMed:9049271}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462891452
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020183207.13e-74light-inducible protein CPRF2-like isoform X1
SwissprotQ7X9A81e-21RSBZ2_ORYSJ; bZIP transcription factor RISBZ2
TrEMBLM8A8C45e-75M8A8C4_TRIUA; Light-inducible protein CPRF2
STRINGTRIUR3_15470-P19e-76(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75952943
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54620.13e-17basic leucine zipper 25
Publications ? help Back to Top
  1. Onodera Y,Suzuki A,Wu CY,Washida H,Takaiwa F
    A rice functional transcriptional activator, RISBZ1, responsible for endosperm-specific expression of storage protein genes through GCN4 motif.
    J. Biol. Chem., 2001. 276(17): p. 14139-52
    [PMID:11133985]
  2. Yang D,Wu L,Hwang YS,Chen L,Huang N
    Expression of the REB transcriptional activator in rice grains improves the yield of recombinant proteins whose genes are controlled by a Reb-responsive promoter.
    Proc. Natl. Acad. Sci. U.S.A., 2001. 98(20): p. 11438-43
    [PMID:11572990]
  3. Cheng S,Wang Z,Hong M
    Rice bZIP protein, REB, interacts with GCN4 motif in promoter of Waxy gene.
    Sci. China, C, Life Sci., 2002. 45(4): p. 352-60
    [PMID:18759022]