PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462890365
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family C3H
Protein Properties Length: 532aa    MW: 60440.4 Da    PI: 8.9261
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462890365genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH171.1e-05104127226
                -S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                k  lC ff   G+C+ G +CkF+H+
  462890365 104 KSILCEFFKV-GQCQKGFKCKFSHD 127
                6779**9999.*************7 PP

2zf-CCCH171.1e-05258281226
                -S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                k  lC ff   G+C+ G +CkF+H+
  462890365 258 KSILCEFFKV-GQCQKGFKCKFSHD 281
                6779**9999.*************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.26E-5102127IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-4102128IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.831102129IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.3E-4104127IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-4256282IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.26E-5256281IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.831256283IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.3E-4258281IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.953326364IPR000571Zinc finger, CCCH-type
SMARTSM003564.3326363IPR000571Zinc finger, CCCH-type
PfamPF165434.2E-16383462IPR032378ZC3H15/TMA46 family, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 532 aa     Download sequence    Send to blast
MPPKKAQPSK ADLAKKQKVV EDKTFGLKNK NKSKNVQKYV QSLHQAVQPK PDPSKTAAKA  60
RKTAQIEHRA GKKKEEEKAR EKELNDLFKV AVSQPKVPVG VDPKSILCEF FKVGQCQKGF  120
KCKFSHDLNV QRKGEKIDIY TDKRDAAREE QPGSMPPKKA QPSKADLAKK QKVVEDKTFG  180
LKNKNKSKNV QKYVQSLHQA VQPKPDPSKT AAKARKTAQI EHRAGKKKEE EKAREKELND  240
LFKVAVSQPK VPVGVDPKSI LCEFFKVGQC QKGFKCKFSH DLNVQRKGEK IDIYTDKRDA  300
DTMEDWDQET LEKVVESKKT EYQQNKPTDI VCKYFLDAVE KKQYGWFWVC PNGGKDCHYR  360
HALPPGYILK SQMKALLEEE SEKIAIEDEI EDQRKKTKTS TPMTTELFME WKRKKAEEKE  420
AGQAALRAER AKNDRMSGRE LFMADASVFV DDAEAYEVYE RDEEPEANDE PAKKSRDAGP  480
SSSTSNGKQA EEPDEDDIDI DDDLDLDELN ELEASLSRTS IQIREPGEGT SS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1393414RKKTKTSTPMTTELFMEWKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMap462890365
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9628980.0EU962898.1 Zea mays clone 246367 nucleic acid binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006646456.20.0PREDICTED: zinc finger CCCH domain-containing protein 11
SwissprotQ0JHZ20.0C3H11_ORYSJ; Zinc finger CCCH domain-containing protein 11
TrEMBLJ3L5K20.0J3L5K2_ORYBR; Uncharacterized protein
STRINGOB01G45080.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP88592027
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20280.11e-139C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]