PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462890027
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family C3H
Protein Properties Length: 431aa    MW: 46349.6 Da    PI: 7.8144
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462890027genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.41.1e-07108129426
                ---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                ++C++f++ G C +G+rC+F H+
  462890027 108 RPCKYFLA-GDCTFGERCRFPHS 129
                79******.***********997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.6812854IPR000571Zinc finger, CCCH-type
SMARTSM003560.0882953IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.591104131IPR000571Zinc finger, CCCH-type
SMARTSM003560.0011104130IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.02E-5106129IPR000571Zinc finger, CCCH-type
PfamPF006425.3E-5108129IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-4108130IPR000571Zinc finger, CCCH-type
SMARTSM003208.6E-6135174IPR001680WD40 repeat
Gene3DG3DSA:2.130.10.104.6E-45138422IPR015943WD40/YVTN repeat-like-containing domain
PfamPF004001.0E-5139174IPR001680WD40 repeat
SuperFamilySSF509781.46E-45141423IPR017986WD40-repeat-containing domain
PROSITE profilePS5008213.951142183IPR001680WD40 repeat
PROSITE profilePS5029421.436142391IPR017986WD40-repeat-containing domain
PROSITE patternPS006780161175IPR019775WD40 repeat, conserved site
PRINTSPR003204.4E-7161175IPR020472G-protein beta WD-40 repeat
SMARTSM00320440177212IPR001680WD40 repeat
SMARTSM0032026214251IPR001680WD40 repeat
SMARTSM003200.011258295IPR001680WD40 repeat
PfamPF004000.079263295IPR001680WD40 repeat
PROSITE profilePS5008210.876265304IPR001680WD40 repeat
PROSITE patternPS006780282296IPR019775WD40 repeat, conserved site
PRINTSPR003204.4E-7282296IPR020472G-protein beta WD-40 repeat
SMARTSM003202.4E-4298335IPR001680WD40 repeat
PfamPF004000.012300334IPR001680WD40 repeat
PRINTSPR003204.4E-7322336IPR020472G-protein beta WD-40 repeat
SMARTSM003205.3339382IPR001680WD40 repeat
SMARTSM0032035385422IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MDIEADGRFG NKRVHNRLGP GSGGPPSSTS GKVCNYWRQG RCNRFPCPFL HSELPEAAAP  60
NKRSSGPGGN VWRNPNVGGG RGGGGGHNRW GRGPGGGSGG VSQKPPDRPC KYFLAGDCTF  120
GERCRFPHSY HISDSITMLT PLKGHEKVIT GIALPTGSDK LYTGSKDGTV RMWDCQTGQC  180
AGVINMGREV GCMISEGPWL FVGIPDAVKV WNMQTAAEMN LTGPTGQVYA LAVANELLFA  240
AIQDGRILAW RFSAATNCFE PAASLVGHQL AVVSLVVGGM RLYSASMDKT IKVWDLATLQ  300
CIQTLSDHTD VVMSVLCWDQ FLLSCSLDRS IKVWAATESG NLEVTYTHTE EQGALALSGM  360
PDAQSKPVLL SSLNDNTVRL YDLPSFSDRG RIFSKQEIRA IQMGPGGLFF TGDGAGELKV  420
WQWIIEGSQT S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A5e-201394218323Tako8
6g6n_A5e-201394218323Tako8
6g6n_B5e-201394218323Tako8
6g6n_C5e-201394218323Tako8
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17885GGRGGGGG
Cis-element ? help Back to Top
SourceLink
PlantRegMap462890027
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002454483.10.0zinc finger CCCH domain-containing protein 17
SwissprotQ0DYP50.0C3H17_ORYSJ; Zinc finger CCCH domain-containing protein 17
TrEMBLA0A3L6QCM90.0A0A3L6QCM9_PANMI; Nucleic acid binding protein
STRINGPavir.Aa00915.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20263442
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25440.11e-180zinc finger WD40 repeat protein 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]