PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462889186
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family bHLH
Protein Properties Length: 301aa    MW: 32303.2 Da    PI: 6.9561
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462889186genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.61.3e-09143190455
                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                +h+ +Er RR+ri +++  L+ l+P +    +k   Ka iL + ++Y++sLq
  462889186 143 SHSLAERVRRERISERMRMLQALVPGC----DKVTGKALILDEIINYVQSLQ 190
                8*************************9....555*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.93E-17137205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.30E-11137194No hitNo description
Gene3DG3DSA:4.10.280.101.0E-16139203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.542139189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-6143190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.9E-10145195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MADFSSHRSL LLKMPAAMTN GHSPNLPAGL LFYSQSHGGQ AAPASANATS GGAAAMAEDA  60
SLESSSAVVD TSPQGSPSPM DRKRKATEDS ATLSSGHSKD CKEGKSKRGK RSSKEAEEKS  120
TTEDEPPKGY IHVRARRGQA TDSHSLAERV RRERISERMR MLQALVPGCD KVTGKALILD  180
EIINYVQSLQ NQVEFLSMRI ASMSPVLYGF GMDSDGIHEQ AQKMGTMFQE ALAMPGPVPN  240
QASPATSQAI MDTTSTTAFP LHGQGAISFS QDSSSYLMQA VGEPRQELLN QLVFNNMCSF  300
Q
Cis-element ? help Back to Top
SourceLink
PlantRegMap462889186
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0590410.0AK059041.1 Oryza sativa Japonica Group cDNA clone:001-021-D04, full insert sequence.
GenBankCT8305460.0CT830546.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN074O02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025821629.11e-177transcription factor bHLH137-like isoform X1
SwissprotQ93W882e-58BH137_ARATH; Transcription factor bHLH137
TrEMBLA0A3L6PU481e-179A0A3L6PU48_PANMI; Uncharacterized protein
STRINGPavir.Fa00144.1.p1e-176(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23583791
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.28e-44bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]