PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462888920
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family C3H
Protein Properties Length: 678aa    MW: 78597 Da    PI: 8.5296
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462888920genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.91.3e-06654677326
                S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                +++C+f++++G+C+y ++C ++H+
  462888920 654 RKPCNFYYKNGWCRYEENCWYSHD 677
                79*******************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF689064.21E-6156196No hitNo description
Gene3DG3DSA:1.10.720.301.9E-7157196IPR003034SAP domain
PfamPF020375.6E-7161195IPR003034SAP domain
PROSITE profilePS508008.728161195IPR003034SAP domain
PROSITE profilePS5010313.742651678IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-5652677IPR000571Zinc finger, CCCH-type
SMARTSM003560.0091652678IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-4653677IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.6E-4654677IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 678 aa     Download sequence    Send to blast
MAAASAAGDP RARRLPQSPE ERREEDESEE EEEVESGEED EGDGDGSEVA SLADLCDPDT  60
GSDDDPTFDP DADGDLEVEA VLRSRMSRMS ISASARKGRY GGGGPSLFFP FSDWGAKLIR  120
KGSAVPKMEK EDIDLLAMVD KLIKVVDMDI VAMYLCADGQ LEKLKVYECK SYLRMHKLRL  180
TGKKEVLLNR IREHIEVKNA REVKYPVSSF VLNCKGDACK DDVVMFEQNI YRRKKGAPRE  240
VKRLCGQRTN TGRIIKESYG TAKQQHTFTI EILWSKGYKP WPPLHPLLIK GRNLYKDKTM  300
RQPWTDEEER NRVLQEKHAR GFVARKSRAS RIQEKEIERK MKFNSLPLSI RTDEMKCPSL  360
QNGERGNTMQ QHIPLKVTPT QHNEVLPQKV GARTFKQECN EGPSIQPGGL QKQMHPQATH  420
TQQTFKDSHQ QSKYQNEAEV LQQEGTMGTY RKECTDGQAP SQQNRGSGNA RHHQISSKLS  480
TSHQTSKYPQ QPPNHQYHND VRSYRGEVDY QNNRYRAAEY SEPVYQPRGN SIQHANAHQH  540
GSNCHQNAPA DHSVHQPLRS RNQNFSSRDQ YYGQGYYHQY NSGYRRMTRE QYHPQGPQQN  600
QHQNEYNHGH TTQYQYHTQQ NQHQNYGDHR RTNHKQHYHE QNQPQQHPIQ PSQRKPCNFY  660
YKNGWCRYEE NCWYSHDF
Cis-element ? help Back to Top
SourceLink
PlantRegMap462888920
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004986580.20.0zinc finger CCCH domain-containing protein 62
SwissprotQ338N21e-179C3H62_ORYSJ; Zinc finger CCCH domain-containing protein 62
TrEMBLA0A368SKH20.0A0A368SKH2_SETIT; Uncharacterized protein
STRINGSi040267m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP131072022
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]