PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462887325
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family C3H
Protein Properties Length: 700aa    MW: 78593.7 Da    PI: 7.6713
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462887325genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH222.8e-07102123426
                ---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                ++C+ fa+ G C+yG++C  +Hg
  462887325 102 PICS-FAAAGNCPYGESCLQMHG 123
                6788.*****************9 PP

2zf-CCCH27.45.9e-09339359526
                --SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                 C f+++ G C+yG+rC++ H+
  462887325 339 VCTFYQK-GACSYGSRCRYDHV 359
                5******.*************7 PP

3zf-CCCH222.8e-07457478426
                ---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                ++C+ fa+ G C+yG++C  +Hg
  462887325 457 PICS-FAAAGNCPYGESCLQMHG 478
                6788.*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.13698125IPR000571Zinc finger, CCCH-type
SMARTSM003560.002599124IPR000571Zinc finger, CCCH-type
SuperFamilySSF578501.79E-11156231No hitNo description
Gene3DG3DSA:3.30.40.101.1E-9160226IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001620.00104166226No hitNo description
SMARTSM001842.5E-7167224IPR001841Zinc finger, RING-type
PfamPF000974.0E-7167224IPR018957Zinc finger, C3HC4 RING-type
PROSITE profilePS5008912.224167225IPR001841Zinc finger, RING-type
PROSITE patternPS005180191200IPR017907Zinc finger, RING-type, conserved site
SMARTSM003560.011254282IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.676254283IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.896306333IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-4307332IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.27E-6308331IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.277334361IPR000571Zinc finger, CCCH-type
SMARTSM003563.4E-4336360IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.0E-4339358IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-6339359IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.136453480IPR000571Zinc finger, CCCH-type
SMARTSM003560.0025454479IPR000571Zinc finger, CCCH-type
SuperFamilySSF578501.79E-11511586No hitNo description
Gene3DG3DSA:3.30.40.101.1E-9515581IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001620.00104521581No hitNo description
SMARTSM001842.5E-7522579IPR001841Zinc finger, RING-type
PfamPF000974.0E-7522579IPR018957Zinc finger, C3HC4 RING-type
PROSITE profilePS5008912.224522580IPR001841Zinc finger, RING-type
PROSITE patternPS005180546555IPR017907Zinc finger, RING-type, conserved site
PROSITE profilePS5010313.676609638IPR000571Zinc finger, CCCH-type
SMARTSM003560.011609637IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 700 aa     Download sequence    Send to blast
MSTKRYDHVK VSRNPTVMPP PPSSSSTRRV ASTSLQLLGS SHPPHTVHQT DTSNETQQVS  60
HSASKPAWRN DFLKASAAED GIDWSSNPTE QNQTSMRPAD LPICSFAAAG NCPYGESCLQ  120
MHGDLCTTCG KMCLHPYRPD EREEHIKLCE KNHKRLEALK RSQEIECSVC LDRVLSKPTA  180
AERKFGLLSE CDHPFCIACI RNWRNNSPSS GMDVNSALRA CPICRKLSYY VIPSVLWYFS  240
KEEKQEITES YKSKLKSIDC KYFDFGTGSC PFGTSCFYRH AYRDGRLEEV VLRHLDADDG  300
STVIAKNIRV LCKFYMHGAC LKGEYCEFSH DWSDQANNVC TFYQKGACSY GSRCRYDHVK  360
VSRNPTVMPP PPSSSSARRV ASTSLQLLGS SHPPHMVHQT DTSNETQQVP MNMLAHSASK  420
PAWRNDFLKA SAAEDGIDWS SNPTEQNQTS MRPADLPICS FAAAGNCPYG ESCLQMHGDL  480
CTTCGKMCLH PYRPDEREEH IKLCEKNHKR LEALKRSQEI ECSVCLDRVL SKPTAAERKF  540
GLLSECDHPF CIACIRNWRN NSPSSGMDVN SALRACPICR KLSYYVIPSV LWYFSKEEKQ  600
EITESYKSKL KSIDCKYFDF GTGSCPFGTS CFYRHAYRDG RLEEVVLRHL DADDGSTTIG  660
LPQSDASLGT SSCTYIKYSD DQLRVANFLD QSLTRPSCGM
Functional Description ? help Back to Top
Source Description
UniProtE3 ubiquitin ligase catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462887325
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0943560.0FP094356.1 Phyllostachys edulis cDNA clone: bphyem202c13, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004965338.10.0E3 ubiquitin-protein ligase makorin
SwissprotQ5ZA070.0C3H41_ORYSJ; E3 ubiquitin-protein ligase makorin
TrEMBLK3XXQ20.0K3XXQ2_SETIT; Uncharacterized protein
STRINGSi006712m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP53263356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-135C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Sahi VP, et al.
    A molecular insight into Darwin's "plant brain hypothesis" through expression pattern study of the MKRN gene in plant embryo compared with mouse embryo.
    Plant Signal Behav, 2012. 7(3): p. 375-81
    [PMID:22499205]
  3. Wadekar HB,Sahi VP,Morita EH,Abe S
    MKRN expression pattern during embryonic and post-embryonic organogenesis in rice (Oryza sativa L. var. Nipponbare).
    Planta, 2013. 237(4): p. 1083-95
    [PMID:23262670]