PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462887272
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family bHLH
Protein Properties Length: 275aa    MW: 29554.1 Da    PI: 6.7217
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462887272genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.18.8e-10110157455
                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                +h+ +Er RR++i +++  L++++P +    sk   Ka +L + ++Y++sLq
  462887272 110 SHSLAERVRREKISERMKLLQDIVPGC----SKVTGKAVMLDEIINYVQSLQ 157
                8*************************9....556*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.50E-11104161No hitNo description
SuperFamilySSF474596.41E-17104173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.4E-17106174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.523106156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.9E-7110157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-10112162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MAHDGFTGAF HHELPWPLAH ASAAQFDALQ RRPPASGKSK AKDAVATATG KSPEAERRSK  60
KSKLSADAGA EDDDDLTPAG GDGKGKEVVV AEAPKDYIHV RARRGQATDS HSLAERVRRE  120
KISERMKLLQ DIVPGCSKVT GKAVMLDEII NYVQSLQRQV EFLSMKLSTV NPRLEVDVDS  180
LVQKDANQPC VPAASSLPPP VYSLEGSSSA FCYASSPAVQ SAVTTAKSFE TPSSFVSHGI  240
PDHSLQGFQN GNPQIGSLWE DDLQSLVQMG FRTNT
Cis-element ? help Back to Top
SourceLink
PlantRegMap462887272
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0370222e-84BT037022.1 Zea mays full-length cDNA clone ZM_BFb0151M19 mRNA, complete cds.
GenBankBT0636602e-84BT063660.1 Zea mays full-length cDNA clone ZM_BFc0091C03 mRNA, complete cds.
GenBankKJ7268662e-84KJ726866.1 Zea mays clone pUT3407 bHLH transcription factor (bHLH141) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012703449.11e-115transcription factor bHLH62
TrEMBLK3ZII51e-113K3ZII5_SETIT; Uncharacterized protein
STRINGPavir.Ha00788.1.p1e-119(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP133132532
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.19e-58bHLH family protein