PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462887128
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family AP2
Protein Properties Length: 430aa    MW: 48042.8 Da    PI: 10.3529
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462887128genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP223.41.5e-072245129
        AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrk 29
               s+y+GV++++++grW+++I+d+      k
  462887128 22 SQYRGVTFYRRTGRWESHIWDC-----GK 45
               78*******************4.....14 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.9E-62267IPR016177DNA-binding domain
SMARTSM003804.5E-142372IPR001471AP2/ERF domain
CDDcd000181.28E-102368No hitNo description
CDDcd000184.23E-12136181No hitNo description
SuperFamilySSF541719.15E-7136180IPR016177DNA-binding domain
SMARTSM003801.1E-12137185IPR001471AP2/ERF domain
PRINTSPR003674.2E-6138149IPR001471AP2/ERF domain
CDDcd000183.41E-12214259No hitNo description
SuperFamilySSF541711.83E-6214258IPR016177DNA-binding domain
SMARTSM003805.7E-13215263IPR001471AP2/ERF domain
PRINTSPR003674.2E-6239259IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
MELDLNPPAA KKSRRGPRSR SSQYRGVTFY RRTGRWESHI WDCGKQVAYD RAAIKFRGVD  60
ADINFNLSDY EDDMKQVRNK LNYTRRERVR PVNHLQLNLT CHGLGSLGAP QMKSLSKEEF  120
VHVLRRQSTG FSRGSSKYRG VTLHKCGRWE ARMGQFLGKK AYDRAAIKFR GVDADINFNL  180
SDYEDDMEQM KSLSKEEFVH VLRRQSTGFS RGSSKYRGVT LHKCGRWEAR MGQFLGKKAY  240
DKAAIKCNGR EAVTNFEPST YEGELLTEVG SEGADVDLNL SISQPASQSP KRDKNSLGLQ  300
LHHGSFEGSE LKRGKASIDA PSELAGRPHR YPLLTEHPPI WPAQSHPFFS NNEDATRDHN  360
RRPEGGTGAV PSWAWKVSKP SPTLPLPLFS SSSSSAAASS GFSNTATTAA PATPSATLRF  420
DPSSSSSRHR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Regulator of starch biosynthesis especially during seed development (e.g. endosperm starch granules); represses the expression of type I starch synthesis genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q2TQ34}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462887128
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021303260.11e-148ethylene-responsive transcription factor RAP2-7 isoform X1
SwissprotB8AXC31e-120AP21_ORYSI; APETALA2-like protein 1
TrEMBLA0A1E5V1X41e-149A0A1E5V1X4_9POAL; Ethylene-responsive transcription factor RAP2-7
STRINGPavir.J23348.1.p1e-138(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100832935
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.14e-67related to AP2.7