PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462886641
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family bHLH
Protein Properties Length: 172aa    MW: 18527.6 Da    PI: 8.7417
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462886641genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH20.68.3e-073312255
               HHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH 22 eLrellPkaskapskKlsKaeiLekAveYIksLq 55
               +L++l+P++      K +Ka++L ++++Y+k+Lq
  462886641  3 TLQKLVPNS-----SKTDKASMLDEVIDYLKQLQ 31
               799999997.....7******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.049130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.1E-10139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.31E-8135No hitNo description
SuperFamilySSF474598.77E-11155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MKTLQKLVPN SSKTDKASML DEVIDYLKQL QAQVQTMSRM SSMMMPMAMP PLQMSVMAQM  60
AQMAQMAQMA QGMMNMGSLA QPGFAPPMMH PPPFIPMPWD ATGPSSGAGA AADRAPQPGG  120
TAVPDAFAAF LACQQAQQNG QQQQGSMEAY NKMLAMCQKL NQQQGQPSNP KQ
Cis-element ? help Back to Top
SourceLink
PlantRegMap462886641
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3614202e-70AK361420.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1140E09.
GenBankAK3678142e-70AK367814.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2062O04.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008658346.11e-46transcription factor UNE10 isoform X3
RefseqXP_015697075.13e-47PREDICTED: transcription factor UNE10-like
TrEMBLA0A0E0IWC92e-50A0A0E0IWC9_ORYNI; Uncharacterized protein
STRINGONIVA10G20730.18e-48(Oryza nivara)
STRINGLPERR10G14070.17e-48(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74743140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.16e-15bHLH family protein