PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462886340
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family bHLH
Protein Properties Length: 293aa    MW: 32397.7 Da    PI: 6.9628
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462886340genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH56.74.3e-18958255
               HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
               r +h++ E+rRR++iN++f+ LrellP++    ++K +Ka+ L +++eYI+ Lq
  462886340  9 RSKHSATEQRRRSKINDRFQILRELLPHS----DQKRDKATFLLEVIEYIRFLQ 58
               889*************************9....9*******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.103.6E-24478IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.97E-19575IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.78757IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-15958IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.47E-16961No hitNo description
SMARTSM003531.2E-121363IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MDQRPNTPRS KHSATEQRRR SKINDRFQIL RELLPHSDQK RDKATFLLEV IEYIRFLQEK  60
VNKYEASFPE WNQENAKILP WSNIYFRSFW KNAQSKGQIP GDALPDPAQF MKNGSSPGFN  120
FTGQLDDNHD TMTSAAASGA QDQTETDHMA SVSYRSAQTP TNITNNVASQ CQPQWTGPSP  180
VDDCAVNSET LNNQQLIIDE GTISVSSQYS QELLNSLTQA LQSSGIDLSQ ASISVQINLG  240
KRAVKRPAAG VSSKEPTETH PSSNNETGHQ LTMLGSGAEA PSHATKRHKP GNS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00219DAPTransfer from AT1G69010Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap462886340
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025801931.10.0transcription factor BIM2-like isoform X11
TrEMBLA0A2S3H0N90.0A0A2S3H0N9_9POAL; Uncharacterized protein
STRINGPavir.J04606.1.p1e-175(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76237128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.13e-68BES1-interacting Myc-like protein 2