PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462884738
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family bHLH
Protein Properties Length: 256aa    MW: 25766.2 Da    PI: 9.2585
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462884738genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.12.7e-124893555
               HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH  5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
               h+++Er RR+ri +++  L+el+P+a      K +Ka++L + ++Y+k Lq
  462884738 48 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 93
               99***********************8.....6******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.49E-1641100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.73E-134196No hitNo description
PROSITE profilePS5088817.394392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.5E-1645100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-94893IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-134998IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048767Biological Processroot hair elongation
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MASQGFGGGG GGGASTGGGA SQQQTAGGAP APPRQRVRAR RGQATDPHSI AERLRRERIA  60
ERMKALQELV PNANKTDKAS MLDEIIDYVK FLQLQVLSMS RLGGAAAVAP LVADMSSEGR  120
GGGAASAAPA GSDGMAVTEQ QVAKLMEEDM GRAMQYLQGK GLCLMPVSLA SAISTATCHM  180
RPPAGPIQPG IGATAAHHMA AAMRMSGMNG GGDAVPASPS MSVLTAQSAM ANGAAAADGE  240
ASQQQQQKDA ASVSKP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15257RLRRER
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00659PBMTransfer from Pp3c14_15890Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap462884738
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0620761e-153BT062076.1 Zea mays full-length cDNA clone ZM_BFb0212P11 mRNA, complete cds.
GenBankKJ7279381e-153KJ727938.1 Zea mays clone pUT6033 bHLH transcription factor (bHLH88) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025799597.11e-118glycine, alanine and asparagine-rich protein-like
SwissprotQ9ZUG92e-76BH066_ARATH; Transcription factor bHLH66
TrEMBLA0A2S3GZY81e-116A0A2S3GZY8_9POAL; Uncharacterized protein
STRINGPavir.Ba01914.1.p1e-111(Panicum virgatum)
STRINGMLOC_13438.21e-111(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141937118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.12e-43LJRHL1-like 1
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Zhang J, et al.
    Sperm cells are passive cargo of the pollen tube in plant fertilization.
    Nat Plants, 2017. 3: p. 17079
    [PMID:28585562]