PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462884020
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family AP2
Protein Properties Length: 337aa    MW: 37759.7 Da    PI: 8.4364
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462884020genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2414.7e-131167155
        AP2  1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55
               s y+GV++++++gr++A+++d  ++n+ ++k+   g ++ +e Aa+a++ a++k++g
  462884020 11 SIYRGVTRHRWTGRYEAHLWDkSTWNQnQNKKGKQGAYDDEEAAARAYDLAALKYWG 67
               57*******************6666777775555599******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.0E-81167IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-151177IPR016177DNA-binding domain
SMARTSM003802.2E-181281IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.7E-121276IPR001471AP2/ERF domain
PROSITE profilePS5103218.2281275IPR001471AP2/ERF domain
PRINTSPR003673.0E-51324IPR001471AP2/ERF domain
PRINTSPR003673.0E-55777IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MPPCAAGKRS SIYRGVTRHR WTGRYEAHLW DKSTWNQNQN KKGKQGAYDD EEAAARAYDL  60
AALKYWGAGT QINFPVSDYA RDLEEMQMIS KEDYLVSLRR KSSAFSRGLP KFRGLPRQLH  120
NSRWDTSLGH LLGSDYMNLG CGKDVTLDGK FGGRFGLERK IDLTNYIRWW LPKKTRQSDT  180
SKEDELSDEI RAIENSMQLT EPYKLPSLGF SSSSKPSSAG VSACSILSQS DAFKNFLEKS  240
TKLSEECTLS KEMVEGKAIA SVPATGHDTA AVNLNMNELL VQRTPYTMAT DMPTPMKCTW  300
SPADPVDTLF WSNFILPASQ PVTMATITTT TTLNFEV
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462884020
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004962201.10.0AP2-like ethylene-responsive transcription factor At2g41710
SwissprotQ8GWK22e-88AP2L4_ARATH; AP2-like ethylene-responsive transcription factor At2g41710
TrEMBLK3Z5Y40.0K3Z5Y4_SETIT; Uncharacterized protein
STRINGSi021952m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92003136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41710.16e-80AP2 family protein