PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462883287
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family bHLH
Protein Properties Length: 257aa    MW: 28703 Da    PI: 6.9017
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462883287genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.15e-111822221055
                HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                ++RR+riN+++  L++l+P+      +K++ +++Le+Av+Y+k Lq
  462883287 182 KKRRERINEKLRILQQLIPNG-----TKVDISTMLEEAVQYVKFLQ 222
                9******************97.....8******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.1E-13169234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.49E-14170237IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.04172221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.9E-11178227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.22E-12181226No hitNo description
PfamPF000102.6E-8182222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0016049Biological Processcell growth
GO:0048766Biological Processroot hair initiation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
METKFTSVWS EESEMIAHLQ SMFWSNSDSD ANLSSCNTST DSCVTASTMP SGLPHFESQC  60
YNAVSLMNNA MHWCLDHKSQ SITATTNAVA GDKRMFPMDE QRKKSRSTKK KLRTVAQLSR  120
TLSSSTLDDE SNAQLANQSN SWSCSSEDDS NGVCEEAFSL KRSDSSSVRS RSSKNSQSLY  180
AKKRRERINE KLRILQQLIP NGTKVDISTM LEEAVQYVKF LQLQIKLLSS DDTWMYAPLA  240
YNGMGIDLSV STAAYQS
Cis-element ? help Back to Top
SourceLink
PlantRegMap462883287
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025826894.12e-98transcription factor bHLH139-like isoform X1
TrEMBLA0A2S3IFD15e-97A0A2S3IFD1_9POAL; Uncharacterized protein
STRINGSi028242m3e-96(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140022528
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.14e-40bHLH family protein