PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462883221
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family C3H
Protein Properties Length: 249aa    MW: 27582.6 Da    PI: 9.3906
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462883221genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.73.4e-12198223126
                --S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                y   +C+++ +tG+C yGd+CkF H+
  462883221 198 YQPDICKDYKETGYCGYGDSCKFVHD 223
                67789********************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902295.23E-9196228IPR000571Zinc finger, CCCH-type
SMARTSM003562.5E-7197224IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.793197225IPR000571Zinc finger, CCCH-type
PfamPF006427.4E-10198223IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.1E-12198228IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MADSDGGGSA PVRNFLRKLP KNIRKRPATP AGSDDEDDGG GGAIAALRSK KVPSALGKLL  60
FSSTDGSAEE PRLFQYEPSR TIQASTDSRA TAAIEMETAC RKFETRSVDP NIDSDERAIR  120
ERQLKQADQD SLKNKEEPRR LWRIRRRGGV LQGDPRVHGP QGRVPAGAHG TVSGEKAGGS  180
HGPLRAPAHI RRSAQFDYQP DICKDYKETG YCGYGDSCKF VHDRGNYKSG WQMEEWQEEV  240
EKDRTRRIA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5z56_M3e-23182234181233RING finger protein 113A
5z58_M3e-23182234181233RING finger protein 113A
6ff4_t3e-23182234181233RING finger protein 113A
6ff7_t3e-23182234181233RING finger protein 113A
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap462883221
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020156391.19e-77zinc finger CCCH domain-containing protein 15
SwissprotQ6K4V31e-71C3H15_ORYSJ; Zinc finger CCCH domain-containing protein 15
TrEMBLA0A3B6HSX07e-83A0A3B6HSX0_WHEAT; Uncharacterized protein
STRINGTraes_4AS_866E12EE7.11e-83(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80713645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06420.22e-53C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]