PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462883206
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family bHLH
Protein Properties Length: 276aa    MW: 29498.6 Da    PI: 7.0547
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462883206genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.41.2e-1386136255
                HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                +++h ++Er+RR+++N+ ++ Lr+l+P       k+ + a+i   +v+YIk+Lq
  462883206  86 KMSHIAVERNRRKQMNEHLAVLRSLMPCF---FVKRGDQASIIGGVVDYIKELQ 136
                789*************************8...89*******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.89E-1482140No hitNo description
SuperFamilySSF474593.01E-1783152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-1384139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.3784135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.6E-1186136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.1E-1290141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MGDGGLCELR HVSDAEDLFS ILETWEGCMN GAPAGGGGGA AVAAAFCQNC RRRSADEAAK  60
GAPVHKKQKS SSAPAPDSAD DDGEAKMSHI AVERNRRKQM NEHLAVLRSL MPCFFVKRGD  120
QASIIGGVVD YIKELQQLLR SLEAKKHRKT YADQSPPPPP AAAAAYMASP AMTPTTSSSS  180
SSYHDQQQHF PQPYLPTLDS IMTELAAHAA RPGALAIPDV KVEFAGPNLV LKTVSRRAPG  240
QALKIIAALE SLELEILHVS VSTVDDTMMH SFTIKV
Cis-element ? help Back to Top
SourceLink
PlantRegMap462883206
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9758968e-68EU975896.1 Zea mays clone 504696 DNA binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025799200.11e-111transcription factor SPEECHLESS-like
TrEMBLA0A0A9TXQ31e-115A0A0A9TXQ3_ARUDO; Uncharacterized protein
STRINGPavir.Ab01030.1.p1e-110(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34843577
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53210.16e-37bHLH family protein