PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462880167
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family WOX
Protein Properties Length: 228aa    MW: 25184.4 Da    PI: 10.3497
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462880167genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.14e-2056118157
                TT--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
   Homeobox   1 rrkRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                r +R+t+t+eql++L+el++    r p+ae+++++++ l    +++ ++V++WFqN++a+e++
  462880167  56 RGSRWTPTPEQLRILKELYYGcgVRSPTAEQIQRITAMLrqhgKIEGKNVFYWFQNHKARERQ 118
                568*****************7669*************************************97 PP

2Wus_type_Homeobox114.45.6e-3758120465
  Wus_type_Homeobox   4 tRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        +RWtPtpeQ++iL+ely+ +G+r+P++e+iqrita+L+++Gkie+kNVfyWFQN+kaRerqk+
          462880167  58 SRWTPTPEQLRILKELYYgCGVRSPTAEQIQRITAMLRQHGKIEGKNVFYWFQNHKARERQKK 120
                        8****************999*****************************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500719.97753119IPR001356Homeobox domain
SMARTSM003891.1E-655123IPR001356Homeobox domain
CDDcd000867.70E-856120No hitNo description
PfamPF000466.6E-1856118IPR001356Homeobox domain
SuperFamilySSF466894.34E-1256123IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.4E-758118IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0080166Biological Processstomium development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MQQQQQQKQV SAGEGMAANV GGRSGVSVCR PSGSRWTPTP EQLRILKELY YGCGVRGSRW  60
TPTPEQLRIL KELYYGCGVR SPTAEQIQRI TAMLRQHGKI EGKNVFYWFQ NHKARERQKK  120
RLTSLDVNAT PAGAADINHL GVFSLSPSSG TTSPSSTMGM YTGNGGTSAM QLDTSSHWAD  180
NTAMTTEGSC FLQVIVGLSN TLTRLHGREE HGRRHRRRDV AVGMDLVF
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00265DAPTransfer from AT2G17950Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM2347459e-92AM234745.1 Zea mays mRNA for WUS2 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004960192.13e-64PREDICTED: WUSCHEL-related homeobox 1B-like
SwissprotQ33DK07e-45WOX1B_ORYSJ; WUSCHEL-related homeobox 1B
SwissprotQ7XM138e-45WOX1A_ORYSJ; WUSCHEL-related homeobox 1A
TrEMBLK3ZCE42e-73K3ZCE4_SETIT; Uncharacterized protein
STRINGSi024219m6e-73(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124653136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.16e-35WOX family protein